Playing with SimpleITK and nnU-Net to process data from the CHAOS challenge on Google Colab.

[Imported from FU's GitLab] Master's Thesis Project at Freie Uni. Pipeline that registers a LIF stack of drosophila brains to a template, and then uses the reverse transform to label the brain regions. Resulting analysis (e.g. asymmetry) of the different regions should also be found here although this is not the main interest.