Easy Volumetric Segmentation with Deep Learning

VAN-GAN: Vessel Segmentation Generative Adversarial Network. A tool to segment 3D vascular networks without paired training data.

ActiveSegmentation: A Simulation Framework for Benchmarking Active Learning Strategies for 3D Medical Image Segmentation

Code repository for training a brain tumour U-Net 3D image segmentation model using the 'Task1 Brain Tumour' medical segmentation decathlon challenge dataset.

Lightweight segmentation toolkit for fine-grained and multi-part segmentation of grayscale 2D/3D images, with napari support.

Depth video data-enabled predictions of longitudinal dairy cow body weight using thresholding and Mask R-CNN algorithms

Segmentation in Head and Neck CT images. Report - https://github.com/MrinalJain17/CT-image-segmentation/blob/master/reports/Report.pdf

Official repository for the paper "Attention Mechanism, Linked Networks, and Pyramid Pooling Enabled 3D Biomedical Image Segmentation", SNPD 2022

DataSet Tracker is a software suite for real-time image analysis designed to run on personal computers, smartphones, and smart glasses hardware and suitable for resource-constrained computing

Easily start image segmentation with 3DUNet. Moreover, you can utilize different modules, losses, and more.

Reproduction of QCANet for 3D image segmentation.

[Imported from FU's GitLab] Master's Thesis Project at Freie Uni. Pipeline that registers a LIF stack of drosophila brains to a template, and then uses the reverse transform to label the brain regions. Resulting analysis (e.g. asymmetry) of the different regions should also be found here although this is not the main interest.

Synchrotron microCT scans for Cultural Heritage research at SESAME BEATS