A fully reproducible and state-of-the-art ancient DNA analysis pipeline
A collection of R functions to aid in host-pathogen genomic research
Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species
Create standalone HTML reports for tracking SNP clusters within NCBI Pathogen Detection
PathoLin is an automated, dynamic lineage assignment and nomenclature framework for viral pathogens based on haplotype network topology, with PathoLin-GRU for rapid lineage inference.
A selection of databases for Genestrip
A Nextflow workflow to download standard datasets for public health
A genetic sequence analysis on calculating the GC contents and CpG deficiencies on multiple coronaviruses (SAR-CoV, SAR-CoV-2, MERS-CoV and 2 two bat derived SARS-like coronaviruses) to see which coronavirus has the most potentially effective mechanism to escape the anti-virus activities on human bodies.
Academic personal website,
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