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    14 repositories

    • xqtl-protocol

      Public
      Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium
      fungenxqtladsp
      fungenxqtladsp
      Jupyter Notebook
      •
      MIT License
      •53•48•72•1•Updated Apr 9, 2026Apr 9, 2026

    • pecotmr

      Public
      Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
      R
      •
      Other
      •20•33•7•1•Updated Apr 7, 2026Apr 7, 2026

    • colocboost

      Public
      R package implementing multi-context colocalization analysis method for molecular QTL and GWAS studies
      R
      •
      Other
      •5•13•0•1•Updated Apr 6, 2026Apr 6, 2026

    • xQTL-AD-Loci-Explore

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Apr 2, 2026Apr 2, 2026

    • xqtl-resources

      Public
      FunGen-xQTL resources navigation
      Jupyter Notebook
      •
      MIT License
      •11•1•0•0•Updated Mar 26, 2026Mar 26, 2026

    • xqtl-paper

      Public
      FunGen-xQTL phase 1 manuscript
      Jupyter Notebook
      •
      MIT License
      •10•2•0•3•Updated Mar 19, 2026Mar 19, 2026

    • statgen-primer

      Public
      Notes on the statistics background for statistical genetics trainees
      Jupyter Notebook
      •1•12•0•0•Updated Mar 16, 2026Mar 16, 2026

    • mmcloud

      Public
      Utilities to manage jobs on MMCloud from MemVerge Inc
      Python
      •
      MIT License
      •7•0•1•0•Updated Mar 9, 2026Mar 9, 2026

    • pixi-setup

      Public
      Default software packages installation on PC, Mac, HPC and cloud via pixi
      Python
      •
      MIT License
      •3•1•2•0•Updated Feb 26, 2026Feb 26, 2026

    • simxQTL

      Public
      In house simulation R package to support investigations of various QTL association methods
      R
      •
      MIT License
      •4•1•0•0•Updated Feb 17, 2026Feb 17, 2026

    • statgen-advanced

      Public
      Notes on advanced statistical genetics topics focusing on intuition and modeling choices of methods
      Shell
      •1•4•0•1•Updated Jan 1, 2026Jan 1, 2026

    • susieR

      Public archive
      R package for "sum of single effects" regression, version 2.0
      R
      •
      Other
      •54•4•0•0•Updated Nov 20, 2025Nov 20, 2025

    • colocboost-paper

      Public
      Data and code to reproduce analyses in ColocBoost manuscript
      Jupyter Notebook
      •
      MIT License
      •3•1•0•0•Updated May 9, 2025May 9, 2025

    • SuSiEGLMM.jl

      Public
      Julia package for sum of single effects regression with generalized linear mixed model
      Julia
      •
      MIT License
      •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025
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