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GSL Removal
Stephan Aiche edited this page Jan 9, 2014
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1 revision
Tis page is entitled to the documentaion of the removal of the GNU Scientific Library (GSL) from OpenMS. The GSL is published under the Gerneral public Lincense (GPL) which is copy-left. Therefore, we will remove it!
- gsl/gsl_blas.h
- MATH/STATISTICS/GammaDistributionFitter.C
- MATH/STATISTICS/GumbelDistributionFitter.C
- SIMULATION/LABELING/ITRAQLabeler.C
- TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.h
- TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h // gsl linear algebra stuff
- TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h
- TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h
- TRANSFORMATIONS/RAW2PEAK/OptimizePick.h
- TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.h
- gsl/gsl_bspline.h
- ANALYSIS/MAPMATCHING/TransformationModel.h
- gsl/gsl_cdf.h
- ANALYSIS/SVM/SVMWrapper.C
- ANALYSIS/TARGETED/PrecursorIonSelectionPreprocessing.C
- MATH/STATISTICS/LinearRegression.h
- gsl/gsl_errno.h
- COMPARISON/SPECTRA/CompareFouriertransform.h
- gsl/gsl_fft_real.h
- ANALYSIS/MAPMATCHING/MapAlignmentAlgorithmSpectrumAlignment.h
- COMPARISON/SPECTRA/CompareFouriertransform.h
- gsl/gsl_fit.h
- ANALYSIS/MAPMATCHING/TransformationModel.C
- FILTERING/CALIBRATION/InternalCalibration.h
- MATH/STATISTICS/LinearRegression.h
- TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.C
- gsl/gsl_interp.h
- ANALYSIS/MAPMATCHING/TransformationModel.h
- FILTERING/DATAREDUCTION/SILACFilter.h
- FILTERING/DATAREDUCTION/SILACFiltering.h
- TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.C
- TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h
- gsl/gsl_linalg.h
- ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.C
- ANALYSIS/QUANTITATION/ItraqQuantifier.C
- DATASTRUCTURES/Matrix.h
- FILTERING/SMOOTHING/SavitzkyGolayFilter.h
- gsl/gsl_math.h
- APPLICATIONS/TOPP/AdditiveSeries.C
- gsl/gsl_matrix.h
- ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.C
- ANALYSIS/QUANTITATION/ItraqQuantifier.C
- DATASTRUCTURES/Matrix.h
- FILTERING/SMOOTHING/LowessSmoothing.C
- FILTERING/SMOOTHING/SavitzkyGolayFilter.h
- gsl/gsl_multifit.h
- ANALYSIS/MAPMATCHING/TransformationModel.C
- FILTERING/CALIBRATION/TOFCalibration.h
- FILTERING/SMOOTHING/LowessSmoothing.C
- MATH/STATISTICS/GammaDistributionFitter.C
- MATH/STATISTICS/GammaDistributionFitter.h
- MATH/STATISTICS/GaussFitter.h
- MATH/STATISTICS/GumbelDistributionFitter.C
- MATH/STATISTICS/GumbelDistributionFitter.h
- TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.h
- TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h // gsl multidimensional fitting
- TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h
- TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h
- TRANSFORMATIONS/RAW2PEAK/OptimizePick.h
- TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.h
- gsl/gsl_permutation.h
- FILTERING/SMOOTHING/SavitzkyGolayFilter.h
- gsl/gsl_pow_int.h
- FILTERING/SMOOTHING/SavitzkyGolayFilter.h
- gsl/gsl_randist.h
- ANALYSIS/ID/ProtonDistributionModel.C
- APPLICATIONS/UTILS/MSSimulator.C
- MATH/STATISTICS/GammaDistributionFitter.C
- MATH/STATISTICS/GumbelDistributionFitter.C
- SIMULATION/LABELING/BaseLabeler.h
- SIMULATION/SimTypes.h
- TEST/EGHFitter1D_test.C
- TEST/SvmTheoreticalSpectrumGeneratorSet_test.C
- TEST/SvmTheoreticalSpectrumGenerator_test.C
- TRANSFORMATIONS/FEATUREFINDER/IsotopeModel.C
- TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h // gsl random number distributions
- gsl/gsl_rng.h
- APPLICATIONS/UTILS/MSSimulator.C
- CONCEPT/UniqueIdGenerator.C
- MATH/STATISTICS/GammaDistributionFitter.C
- MATH/STATISTICS/GammaDistributionFitter.h
- MATH/STATISTICS/GaussFitter.h
- MATH/STATISTICS/GumbelDistributionFitter.C
- MATH/STATISTICS/GumbelDistributionFitter.h
- SIMULATION/LABELING/BaseLabeler.h
- SIMULATION/SimTypes.h
- TEST/EGHFitter1D_test.C
- TEST/SvmTheoreticalSpectrumGeneratorSet_test.C
- TEST/SvmTheoreticalSpectrumGenerator_test.C
- TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.h
- TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h // gsl random number generators
- TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h
- gsl/gsl_sf_psi.h
- MATH/STATISTICS/GammaDistributionFitter.C
- MATH/STATISTICS/GumbelDistributionFitter.C
- gsl/gsl_sort.h
- APPLICATIONS/TOPP/FileInfo.C
- gsl/gsl_sort_double.h
- ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.C
- ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.C
- gsl/gsl_sort_vector.h
- ANALYSIS/MAPMATCHING/TransformationModel.C
- gsl/gsl_spline.h
- FILTERING/CALIBRATION/TOFCalibration.h
- FILTERING/DATAREDUCTION/SILACFilter.h
- FILTERING/DATAREDUCTION/SILACFiltering.h
- TRANSFORMATIONS/FEATUREFINDER/PeakWidthEstimator.C
- TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h
- gsl/gsl_statistics.h
- ANALYSIS/ID/HiddenMarkovModel.C
- ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmMedian.C
- ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmQuantile.C
- ANALYSIS/MAPMATCHING/ConsensusMapNormalizerAlgorithmThreshold.C
- ANALYSIS/MAPMATCHING/TransformationModel.C
- APPLICATIONS/TOPP/FileInfo.C
- APPLICATIONS/TOPP/MapStatistics.C
- APPLICATIONS/UTILS/ERPairFinder.C
- APPLICATIONS/UTILS/IDMassAccuracy.C
- APPLICATIONS/UTILS/MRMPairFinder.C
- MATH/STATISTICS/LinearRegression.h
- MATH/STATISTICS/PosteriorErrorProbabilityModel.C
- CHEMISTRY/SvmTheoreticalSpectrumGeneratorTrainer.C
- gsl/gsl_vector.h
- ANALYSIS/QUANTITATION/IsobaricIsotopeCorrector.C
- ANALYSIS/QUANTITATION/ItraqQuantifier.C
- DATASTRUCTURES/Matrix.h
- FILTERING/SMOOTHING/LowessSmoothing.C
- FILTERING/SMOOTHING/SavitzkyGolayFilter.h
- MATH/STATISTICS/GammaDistributionFitter.C
- MATH/STATISTICS/GammaDistributionFitter.h
- MATH/STATISTICS/GaussFitter.h
- MATH/STATISTICS/GumbelDistributionFitter.C
- MATH/STATISTICS/GumbelDistributionFitter.h
- TRANSFORMATIONS/FEATUREFINDER/FeatureFinderAlgorithmPicked.h
- TRANSFORMATIONS/FEATUREFINDER/LevMarqFitter1D.h // gsl vector and matrix definitions
- TRANSFORMATIONS/FEATUREFINDER/TraceFitter.h
- TRANSFORMATIONS/RAW2PEAK/OptimizePeakDeconvolution.h
- TRANSFORMATIONS/RAW2PEAK/OptimizePick.h
- TRANSFORMATIONS/RAW2PEAK/TwoDOptimization.h