Rewrite examples to use current API, add README#19
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- pet_breed_audit: use metric="cosine" instead of manual distance matrix - mnist_cosine_tmap: remove commented-out code, use model.path() - smiles_tmap: rewrite as low-level pipeline demo (MinHash/LSHForest) - molecules_tmap: rename from cluster_65053_tmap, high-level counterpart - sar_egfr: use fingerprints_from_smiles/murcko_scaffolds/molecular_properties - convert_old_tmap: use argparse, deduplicate color layout calls - convert_old_afdb: remove sys.path hack, fix lint - Fix bogus pip install tmap[chemistry] and tmap[singlecell] references - Add examples/README.md organized by domain
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