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About the time consumption of umap for integrated data Trigger Cursor Automation #31: Issue #393 labeled by wanruiwen-genomics-cn
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About the time consumption of umap for integrated data Auto Fix Issue (mini-swe-agent) #46: Issue #393 labeled by wanruiwen-genomics-cn
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fix #351: handle singular matrix in sctransform Poisson regression Auto-fix Guard Rails #21: Pull request #439 opened by cursor bot
1s cursorstereopy-issue-handling-14d8
cursorstereopy-issue-handling-14d8
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Problems with h5ad2rds.R Trigger Cursor Automation #30: Issue #387 labeled by wanruiwen-genomics-cn
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Problems with h5ad2rds.R Auto Fix Issue (mini-swe-agent) #45: Issue #387 labeled by wanruiwen-genomics-cn
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Connectivity for spatial_neighbors on cell_bin data Trigger Cursor Automation #29: Issue #245 labeled by wanruiwen-genomics-cn
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Connectivity for spatial_neighbors on cell_bin data Auto Fix Issue (mini-swe-agent) #44: Issue #245 labeled by wanruiwen-genomics-cn
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LinAlgError: Singular matrix error when running sctransform on multi-sample data Trigger Cursor Automation #28: Issue #351 labeled by wanruiwen-genomics-cn
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LinAlgError: Singular matrix error when running sctransform on multi-sample data Auto Fix Issue (mini-swe-agent) #43: Issue #351 labeled by wanruiwen-genomics-cn
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fix #396: reduce spatial_alignment RAM usage with sparse neigh_graph and fix GPU validation Auto-fix Guard Rails #20: Pull request #438 opened by cursor bot
1s cursorautomated-issue-handler-7205
cursorautomated-issue-handler-7205
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fix #391: convert GEF gene names to Unicode in bins reader path Auto-fix Guard Rails #19: Pull request #437 opened by cursor bot
9s cursorstereopy-issue-handling-ad8e
cursorstereopy-issue-handling-ad8e
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High RAM usage and lack of multi-GPU support in spatial_alignment Auto Fix Issue (mini-swe-agent) #42: Issue #396 labeled by wanruiwen-genomics-cn
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High RAM usage and lack of multi-GPU support in spatial_alignment Trigger Cursor Automation #27: Issue #396 labeled by wanruiwen-genomics-cn
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Request for RTX 5070 GPU Support and CUDA 12.x Compatibility Auto Fix Issue (mini-swe-agent) #41: Issue #399 labeled by wanruiwen-genomics-cn
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Request for RTX 5070 GPU Support and CUDA 12.x Compatibility Trigger Cursor Automation #26: Issue #399 labeled by wanruiwen-genomics-cn
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Regarding the issue of using gef for SingleR annotation Trigger Cursor Automation #25: Issue #391 labeled by wanruiwen-genomics-cn
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Regarding the issue of using gef for SingleR annotation Auto Fix Issue (mini-swe-agent) #40: Issue #391 labeled by wanruiwen-genomics-cn
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Strange Error When Running Multi-Sample Integration Analysis Trigger Cursor Automation #24: Issue #374 labeled by wanruiwen-genomics-cn
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Strange Error When Running Multi-Sample Integration Analysis Auto Fix Issue (mini-swe-agent) #39: Issue #374 labeled by wanruiwen-genomics-cn
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Question about plt.paga_time_series_plot Parameters Auto Fix Issue (mini-swe-agent) #38: Issue #401 labeled by wanruiwen-genomics-cn
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Question about plt.paga_time_series_plot Parameters Trigger Cursor Automation #23: Issue #401 labeled by wanruiwen-genomics-cn
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fix #403: auto-detect h5ad flavor and fix read/write round-trip Auto-fix Guard Rails #18: Pull request #436 opened by cursor bot
1s cursorstereopy-issue-handling-90d5
cursorstereopy-issue-handling-90d5
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fix #386: ensure generate_scope_key always returns a hashable string key Auto-fix Guard Rails #17: Pull request #435 opened by cursor bot
1s cursorautomated-issue-handler-192c
cursorautomated-issue-handler-192c
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error in ms_data.tl.cal_qc(scope=slice_generator[:],mode='integrate') Auto Fix Issue (mini-swe-agent) #37: Issue #386 labeled by wanruiwen-genomics-cn
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error in ms_data.tl.cal_qc(scope=slice_generator[:],mode='integrate') Trigger Cursor Automation #22: Issue #386 labeled by wanruiwen-genomics-cn
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