biomodals

Bioinformatics tools running on modal.

Installation

git clone https://github.com/y1zhou/biomodals.git
cd biomodals
pip install .
biomodals --help

Or alternatively, use uv, e.g.:

git clone https://github.com/y1zhou/biomodals.git
cd biomodals
uv run biomodals --help

Getting started

To see a list of all available commands, run:

biomodals list

To get help on a specific app, run:

biomodals help <app-name>

Note that this repository is heavily refactored from the upstream repository. All new apps have the _app.py suffix to distinguish from the original ones.