Skip to content

Vcf import#38

Open
bradwbradw wants to merge 35 commits intomainfrom
vcf_import
Open

Vcf import#38
bradwbradw wants to merge 35 commits intomainfrom
vcf_import

Conversation

@bradwbradw
Copy link
Copy Markdown
Collaborator

This is a new import script that converts a joint VCF file (Variant Call Format, with frequency data) into streams, one for each table in the bvl models. It can be adapted to work with the existing import script by replacing the TSV-reading step with code that reads the stream outputs from there. But at this point, the main runtime for the new scripts (vcf_import/VCF_publish) just outputs TSVs, as a way to ensure accuracy by comparing with existing TSV file examples.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant