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@usadellab

usadellab

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  1. Trimmomatic Trimmomatic Public

    Java 292 81

  2. Helixer Helixer Public

    Using Deep Learning to predict gene annotations

    Python 277 34

  3. gfftk gfftk Public

    GFF toolkit to work with GFF files

    C++ 4

  4. HelixerPost HelixerPost Public

    Rust 9 4

Repositories

Showing 10 of 28 repositories
  • pubplant2schemaorg Public

    This repository automates the transformation of genomic metadata from PubPlant into Schema.org/Dataset JSON-LD.

    usadellab/pubplant2schemaorg’s past year of commit activity
    Python 0 0 0 0 Updated Mar 3, 2026
  • Helixer Public

    Using Deep Learning to predict gene annotations

    usadellab/Helixer’s past year of commit activity
    Python 277 GPL-3.0 34 28 8 Updated Feb 25, 2026
  • Trimmomatic Public
    usadellab/Trimmomatic’s past year of commit activity
    Java 292 81 22 0 Updated Feb 24, 2026
  • dmp-eva Public

    An AI-assisted front-end DMP evaluation tool

    usadellab/dmp-eva’s past year of commit activity
    JavaScript 3 MIT 1 0 0 Updated Feb 23, 2026
  • scimpute Public

    scimpute is a Python module for running gene expression imputation for single cell/nucleus RNA sequencing data.

    usadellab/scimpute’s past year of commit activity
    Python 0 CC-BY-4.0 0 0 0 Updated Feb 17, 2026
  • trimmomatic-validation-2026 Public
    usadellab/trimmomatic-validation-2026’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Feb 15, 2026
  • plant-adaptation-hub-documentation Public
    usadellab/plant-adaptation-hub-documentation’s past year of commit activity
    MDX 0 0 0 0 Updated Jan 22, 2026
  • untwist Public

    Usadellab's contributions to the Untwist project.

    usadellab/untwist’s past year of commit activity
    HiveQL 0 1 0 0 Updated Dec 8, 2025
  • HelixerPost Public
    usadellab/HelixerPost’s past year of commit activity
    Rust 9 GPL-3.0 4 9 2 Updated Dec 8, 2025
  • ScorpionSubmission Public

    Using APIs to get KPIs from Matomo and Google Scholar and submit them to Scorpion (de.NBI)

    usadellab/ScorpionSubmission’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Nov 27, 2025
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