Override biocontainers to quay.io and 4.2 to F2 dragen image

[alexiswl]

Biocontainers overrides from aws ecr to quay.io,

Also migrate from F1 to F2 dragen docker images (just in case) for all WGTS Dragen pipelines.

[Copilot]

Pull Request Overview

This PR migrates biocontainer references from AWS ECR to quay.io and updates Dragen docker images from F1 to F2 versions across multiple WGTS pipeline configurations.

• Migrates biocontainer image sources from AWS ECR to quay.io for better image distribution
• Updates Dragen pipeline docker images to F2 version (627166f0-ab0e-40f4-a191-91e6fcaf50d2:latest)
• Adds cwltool overrides configuration to standardize container references across pipeline managers

Reviewed Changes

Copilot reviewed 3 out of 3 changed files in this pull request and generated 2 comments.

File	Description
set_wgts_alignment_qc_cwl_inputs_sfn.asl.json	Adds cwltool overrides for F2 Dragen alignment image
tumor-normal get_boolean_parameters_from_event_input.py	Adds cwltool overrides for multiqc biocontainer and F2 Dragen images
transcriptome get_boolean_parameters_from_event_input.py	Adds cwltool overrides for qualimap, arriba biocontainers and F2 Dragen image

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