Skip to content

[MAINT] Updated pinned versions of dependencies in setup.cfg #12

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closed
chiuhoward wants to merge 14 commits into from
Closed

[MAINT] Updated pinned versions of dependencies in setup.cfg #12

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
14 commits
Select commit Hold shift + click to select a range
25e4855
Update sklearn to >= 1.5.0
chiuhoward Dec 4, 2024
2eccc1f
update indices_to_mask import that was changed in sklearn 1.3.0
chiuhoward Dec 4, 2024
9a0b84e
change if_delegate_has_method to available_if in metaestimators
chiuhoward Dec 4, 2024
5552f24
change more if_delegate_has_method
chiuhoward Dec 4, 2024
257355d
Fix sklearn to 1.5.2
chiuhoward Dec 5, 2024
0d36bad
Update statsmodels pin from 0.14.0 to 0.14.4
chiuhoward Dec 5, 2024
c3f7960
Update seaborn pin from 0.13.0 to 0.13.2
chiuhoward Dec 5, 2024
555c321
Update pandas pin from 2.1.4 to 2.2.3
chiuhoward Dec 5, 2024
2a340b9
Update matplotlib pin from <3.9 to 3.9.3
chiuhoward Dec 5, 2024
0ed6477
Update scipy pin from 1.3.1 to 1.4.1
chiuhoward Dec 5, 2024
d0c4148
Update dipy pin from 1.0.0 to 1.9.0
chiuhoward Dec 5, 2024
6fd1e5c
Update numpy pin from 1.23.5 to 2.1.3
chiuhoward Dec 5, 2024
4417b47
Update numpy pin from 1.23.5 to 1.26.4, numpy >= 2 breaking change
chiuhoward Dec 5, 2024
d557b04
Update references to richford to tractometry in contributing.md
chiuhoward Dec 5, 2024
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions CONTRIBUTING.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -31,7 +31,7 @@ You can contribute in many ways:

### Report Bugs

Report bugs at <https://github.com/richford/AFQ-Insight/issues>.
Report bugs at <https://github.com/tractometry/AFQ-Insight/issues>.

If you are reporting a bug, please include:

Expand Down Expand Up @@ -64,7 +64,7 @@ articles, and such.
### Submit Feedback

The best way to send feedback is to file an issue at
<https://github.com/richford/AFQ-Insight/issues>.
<https://github.com/tractometry/AFQ-Insight/issues>.

If you are proposing a feature:

Expand Down
7 changes: 4 additions & 3 deletions afqinsight/_serial_bagging.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -23,8 +23,9 @@
_parallel_predict_regression,
)
from sklearn.ensemble._base import _partition_estimators
from sklearn.utils import check_array, check_random_state, indices_to_mask, resample
from sklearn.utils.metaestimators import if_delegate_has_method
from sklearn.utils import check_array, check_random_state, resample
from sklearn.utils._mask import indices_to_mask
from sklearn.utils.metaestimators import available_if
from sklearn.utils.random import sample_without_replacement
from sklearn.utils.validation import (
_check_sample_weight,
Expand Down Expand Up @@ -610,7 +611,7 @@ def predict_log_proba(self, X):
else:
return np.log(self.predict_proba(X))

@if_delegate_has_method(delegate="base_estimator")
@available_if(lambda est: hasattr(est.base_estimator, "decision_function"))
def decision_function(self, X):
"""Average of the decision functions of the base classifiers.

Expand Down
16 changes: 8 additions & 8 deletions setup.cfg
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -33,18 +33,18 @@ setup_requires =
setuptools_scm
python_requires = >=3.10
install_requires =
scipy==1.13.1
dipy>=1.0.0
matplotlib<3.9
scipy==1.14.1
dipy==1.9.0
matplotlib==3.9.3
groupyr>=0.3.4
numpy==1.23.5
pandas==2.1.4
numpy==1.26.4
pandas==2.2.3
requests
seaborn==0.13.0
scikit-learn==1.2.1
seaborn==0.13.2
scikit-learn==1.5.2
sklearn_pandas>=2.0.0
tqdm
statsmodels==0.14.0
statsmodels==0.14.4
zip_safe = False
include_package_data = True
packages = find:
Expand Down