🐻 The open source cohort selection and analysis interface

Core components and documentation of the tranSMART platform. https://i2b2transmart.org/

tranSMART pipeline alternative to ETL, using Spring Batch

Docker scripts for Glowing Bear

🐍 Python client for tranSMART Glowing Bear

tranSMART Arborist ETL toolkit

Core components and documentation of the tranSMART platform.

TranSMART Arborist: Graphical tool for reshaping your data for the tranSMART data warehouse.

Scripts for converting CSR data to TranSMART

TranSMART loader library for Python

Data science with tranSMART REST API in Python and R

A data showcase for displaying a summary of data in TranSMART.

Android Client for TranSMART

ClaML ontology to TranSMART loader

Puppet module for TranSMART

Data extraction, transformation and loading pipeline for the Princess Maxima Center

Export a subset of data from a TranSMART instance based on a query, and upload them to a different (empty) TranSMART instance using transmart-copy. Short for TranSMART hypercube dicer.

Variant store connector for the TranSMART API

ETL process for transforming the MIMIC-III dataset into the required format for tranSMART-batch by using high dimensional data types to store time series data.