Culture-Independent Whole Genome Sequencing (CIWGS) Read Filter Pipeline 🧪🧬🖥️
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Dec 10, 2024 - Nextflow
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pertussis
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Data, R scripts, tables and figures to reproduce the results in Berbers et al., 2021. Nature Communications.
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Nov 13, 2021 - R
Global analysis of pertussis burden in infants (<1 year) using Global Burden of Disease data, examining incidence, mortality, and DALYs across socio-demographic index (SDI) groups from 1990–2023.
linear-regression public-health epidemiology sdi trend-analysis kruskal-wallis pertussis global-burden-of-disease joinpoint-regression
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Feb 14, 2026 - R
Supporting material for the paper "The impact of past vaccination coverage and immunity on pertussis resurgence", M. Domenech de Cellès, F. M. G. Magpantay, A. A. King, and P. Rohani, Science Translational Medicine 10(434): eaaj1748, 2018. https://doi.org/10.1126/scitranslmed.aaj1748
epidemiology vaccination pomp stochastic-models disease-transmission resurgence pertussis whooping-cough iterated-filtering age-structure mossong-matrix honeymoon vaccine-failure
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Mar 19, 2018 - C
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