Estimating gene family turnover rates by likelihood-based methods

Test the Robustness of DAISIE to Geodynamics and Traits

DVFS framework addressing the problem of performance-energy trade-off, 2023.

XBorne tool, a software tool for the probabilistic modeling with Markov chains, 2017.

Simple (linear) birth and death process, also known as the Kendall process

Python demo backend simulating markets using stochastic processes (Brownian motion and birth-death processes). Features user management, order placement/cancellation, order book, SQLite storage, REST API, and real-time price streaming via WebSocket.

Source code for manuscript "Numerical evaluation of the transition probability of the simple birth-and-death process". https://arxiv.org/abs/1909.10765

This is the repository for the C++ code of Bayesian Graphical Regression with Birth-Death Markov Process by Yuen et al.

Gillespie Monte-Carlo dynamic algorithm for BirthDeathProcess process in Julia

Maximum Entropy (MaxEnt) parameter inference in biological networks.