2025

• Knots & Proteins Workshop, Bologna, Tying and Untying: Entangled Landscape of Artificial Knotted Proteins [slides]
• Mediabord, Velké jazykové modely [slides]
• PyConAT, From ML Miracles to AI Trash: Taming the Bullshit in LLMs [slides]
• RECETOX Seminar, How Do Protein Prediction Tools Handle New Structures? A Comparison of AlphaFold2, ESMFold, and OmegaFold [slides]

2024

• Pyvo Praha, DIY AI: Czech Language and Large Language Models, [slides]
• Možnosti a úskalí využití velkých jazykových modelů ve světě mediálního monitoringu, Seznam Meetup Vývoj a praktické použití generativních jazykových modelů na CIIRC ČVUT v rámci Dnů AI, [slajdy], [MiniCzechBenchmark]
• Jak použít AI nástroje na generování textu a obrázků, [slajdy], [cvičení], [ostatní]
• Code 2 Decode: Getting Your Web App 4 Biomed Data Ready in 1 Hour, DjangoConEurope 2024 lightning talk [slides], [repo]
• Unveiling the Entangled Landscape of Artificial Knotted Proteins, [short paper] at ICLR 2024 GEM workshop
• Finetuning Open-Source LLMs to Small Languages workshop at ML Prague 2024: [GitHub repo with exercises], [synczech50] bechmark, [mlprague] benchmark, [cswikimistral_0.1] model at HuggingFace hub, [my slides]
• Knots & Proteins Workshop Ljublana - Knot or Not? Sequence-Based Identification of Knotted Proteins With Deep Learning, [slides]

2023

• Velké jazykomodely české a slovenské, PyData Prague - moderovaná diskuze, [slides]
• PyCoNCZ 2023 Prague - Velké jazykové modely: naučte ChatGPT básnit a zkroťte si svou lamu, [slides]
• EuroPython 2023 Prague - Word Wranglers & News Navigators: Taming GPT-3 Beast for Media Monitoring, [slides], [video] (dryrun at pyvo, [slides], [recording])
• Symposium: Biochemical machine learning IOCB, Prague - Knot or Not? Sequence-Based Identification of Knotted Proteins With Deep Learning, [slides]
• How AI will take my job and kill us all - 45min workshop for students at EDUCAnet Brno
• AI v Monitoře: Jak s pomocí ChatGPT zvládnout informační záplavu - PR Klub
• Could we have ChatGPT for proteins? - bioinf. seminar, CEITEC MU

2022

• Advances in Deep Learning in Genomics and Proteomics - Machine Learning Meetups Brno
• Python for Scientists - 2-Day Python workshop at CCP, IMG AS, Vestec
• ECCB wrap up event, my part of the presentation
• ECCB 2022 - Deep Learning For Biological Sequence Data: From Convolutional Neural Networks To Transformers, [slides & code]
• Master The Tidyverse, 2-Day workshop at the Jackson Laboratory, [materials]
• Transformers, visiting Joanna Sulkowska in Warsaw
• ENBIK 2022 - Transformer Language Models for Genomic Sequences, [abstract], [slides]
• 63rd Annual Drosophila Research Conference - Genomic Benchmarks: A Collection of Datasets For DNA Sequence Classification, [poster]

2021

• Seminář z aplikované matematiky - Time series forecasting – a practioner’s view, [slides]
• Genomic Benchmarks - Labmeeting with Katarina, David and Vlasta
• MolMed Seminar at CEITEC - The Language of DNA: Using NLP Neural Network Methods to Classify Genomic Sequences
• ISMB/ECCB 2021 - Inside the ‘Black Box’: Explainable Deep Learning Models For Image and Sequence Classification, [slides & code]
• Masaryk University - Adv. Data Science Practicum, 12 lectures about Machine Learning (mostly TensorFlow/keras) in Python & R

2020

• ML Meetup Brno flash talk - Do You Speak DNA? Using Natural Language Processing (NLP) Techniques for Classification of Genomic Sequences
• European Conference on Computational Biology (ECCB2020) - Using Deep Learning For Image and Sequence Analysis, [slides], [code]
• PyLadies Data Course lecture - Analýza hlavních komponent (PCA), [materials]
• NDR Conf invited talk - Time Series Forecasting – a Practitioner’s View, [slides]
• Labmeeting_2020_04 - Language of DNA project

2019

• Machine Learning Meetup - Statistical vs. Deep Learning Methods for Time Series Forecasting, [video], [meetup]
• Tech Week - Deep Learning: From Zero To Hero In Two Hours (PyTorch/fastai edition), [code]
• Reading Group - fastai v1, Make NN Uncool Again

2018

• PyConCZ - Deep Learning with Keras & Tensorflow: from Zero to Hero in 3 Hours, [code]

2017

• PyConCZ - Python Alternatives to R/Shiny [code], [video], created in MS PowerPoint
• Labmeeting_2017_05 - My Last Day At JAX [source], built with xaringan and remark.js
• Labmeeting_2017_02 - The Aging Proteome. Is Aging Programmed in our Genes? [source], built with xaringan and remark.js