shooshtarilab
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TMExplorer
TMExplorer PublicA collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
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scATAC.Explorer
scATAC.Explorer PublicA curated collection of currently available scATAC-seq datasets accessible through R, and exportable to other languages.
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scRNAseq-Automated-Cell-Type-Labelling
scRNAseq-Automated-Cell-Type-Labelling PublicJupyter Notebook 6
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Repositories
- wgsscout Public Forked from shooshtarilab/RegSCOUT
Pipeline for integration of WGS with scATAC-seq, scRNA-seq, Hi-C, and eQTL datasets to identify gene regulatory networks underlying complex disease risk.
shooshtarilab/wgsscout’s past year of commit activity - RegSCOUT Public
Pipeline for integration of GWAS with scATAC-seq, scRNA-seq, Hi-C, and eQTL datasets to identify gene regulatory networks underlying complex disease risk.
shooshtarilab/RegSCOUT’s past year of commit activity - TMExplorer Public
A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
shooshtarilab/TMExplorer’s past year of commit activity - GraphComm Public
shooshtarilab/GraphComm’s past year of commit activity - scATAC.Explorer Public
A curated collection of currently available scATAC-seq datasets accessible through R, and exportable to other languages.
shooshtarilab/scATAC.Explorer’s past year of commit activity - AID-TF Public
shooshtarilab/AID-TF’s past year of commit activity - GraphComm_old Public Forked from bhklab/GraphComm
This repository is a fork of the official GraphComm project, tailored to seamlessly integrate with datasets fetched from TMExplorer. Additionally, significant enhancements have been made to increase user-friendliness and accessibility, reducing the level of technical expertise required to use GraphComm.
shooshtarilab/GraphComm_old’s past year of commit activity - ochroGWAS Public
Pipeline for automatic integration of open chromatin regions (peaks) and GWAS data.
shooshtarilab/ochroGWAS’s past year of commit activity
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