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@shooshtarilab

shooshtarilab

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  1. TMExplorer TMExplorer Public

    A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.

    R 19 5

  2. scATAC.Explorer scATAC.Explorer Public

    A curated collection of currently available scATAC-seq datasets accessible through R, and exportable to other languages.

    R 8 1

  3. scRNAseq-Automated-Cell-Type-Labelling scRNAseq-Automated-Cell-Type-Labelling Public

    Jupyter Notebook 6

  4. ochroGWAS ochroGWAS Public

    Pipeline for automatic integration of open chromatin regions (peaks) and GWAS data.

    R 3 2

  5. RegSCOUT RegSCOUT Public

    Pipeline for integration of GWAS with scATAC-seq, scRNA-seq, Hi-C, and eQTL datasets to identify gene regulatory networks underlying complex disease risk.

    R 2 1

  6. open-chromatin-db open-chromatin-db Public

    JavaScript 2

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