Deconcatenate SpatialData to a list of SpatialData objects#1089
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gboscagli wants to merge 2 commits intoscverse:mainfrom
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Deconcatenate SpatialData to a list of SpatialData objects#1089gboscagli wants to merge 2 commits intoscverse:mainfrom
gboscagli wants to merge 2 commits intoscverse:mainfrom
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Following issue scverse/spatialdata-io#318, I created a
deconcatenate()function, alongside a comprehensive test.This function takes as input a
SpatialDataobject with >1 regions and returns one (or more)SpatialDataobjects populated only with data from a specific region and transformed to a given coordinate system. Briefly, this function is a wrapper ofmatch_sdata_to_table().We can also think of an optional parameter controlling the conversion to
AnnData. However,to_legacy_anndata()lives inside spatialdata-io, so @LucaMarconato and other users suggested to add the centroids directly in theAnnDatatable ofSpatialData.Thoughts?