Qa tracking low occupancy

.clang-format

@@ -0,0 +1,90 @@
+---
+Language:        Cpp
+# BasedOnStyle:  sphenix
+AccessModifierOffset: -1
+AlignAfterOpenBracket: Align
+AlignConsecutiveAssignments: false
+AlignConsecutiveDeclarations: false
+AlignEscapedNewlinesLeft: true
+AlignOperands:   true
+AlignTrailingComments: true
+AllowAllParametersOfDeclarationOnNextLine: true
+AllowShortBlocksOnASingleLine: false
+AllowShortCaseLabelsOnASingleLine: false
+AllowShortFunctionsOnASingleLine: All
+AllowShortIfStatementsOnASingleLine: true
+AllowShortLoopsOnASingleLine: true
+AlwaysBreakAfterDefinitionReturnType: None
+AlwaysBreakAfterReturnType: None
+AlwaysBreakBeforeMultilineStrings: true
+AlwaysBreakTemplateDeclarations: true
+BinPackArguments: true
+BinPackParameters: true
+BraceWrapping:   
+  AfterClass:      true
+  AfterControlStatement: true
+  AfterEnum:       false
+  AfterFunction:   true
+  AfterNamespace:  false
+  AfterObjCDeclaration: false
+  AfterStruct:     false
+  AfterUnion:      false
+  BeforeCatch:     false
+  BeforeElse:      false
+  IndentBraces:    false
+BreakBeforeBinaryOperators: None
+BreakBeforeBraces: Allman
+BreakBeforeTernaryOperators: true
+BreakConstructorInitializersBeforeComma: true
+ColumnLimit:     0
+CommentPragmas:  '^ IWYU pragma:'
+ConstructorInitializerAllOnOneLineOrOnePerLine: false
+ConstructorInitializerIndentWidth: 2
+ContinuationIndentWidth: 4
+Cpp11BracedListStyle: true
+DerivePointerAlignment: true
+DisableFormat:   false
+ExperimentalAutoDetectBinPacking: false
+ForEachMacros:   [ foreach, Q_FOREACH, BOOST_FOREACH ]
+IncludeCategories: 
+  - Regex:           '^<.*\.h>'
+    Priority:        1
+  - Regex:           '^<.*'
+    Priority:        2
+  - Regex:           '.*'
+    Priority:        3
+IndentCaseLabels: false
+IndentWidth:     2
+IndentWrappedFunctionNames: false
+KeepEmptyLinesAtTheStartOfBlocks: false
+MacroBlockBegin: ''
+MacroBlockEnd:   ''
+MaxEmptyLinesToKeep: 1
+NamespaceIndentation: All
+ObjCBlockIndentWidth: 2
+ObjCSpaceAfterProperty: false
+ObjCSpaceBeforeProtocolList: false
+PenaltyBreakBeforeFirstCallParameter: 1
+PenaltyBreakComment: 300
+PenaltyBreakFirstLessLess: 120
+PenaltyBreakString: 1000
+PenaltyExcessCharacter: 1000000
+PenaltyReturnTypeOnItsOwnLine: 200
+PointerAlignment: Right
+ReflowComments:  true
+SortIncludes:    true
+SpaceAfterCStyleCast: true
+SpaceBeforeAssignmentOperators: true
+SpaceBeforeParens: ControlStatements
+SpaceInEmptyParentheses: false
+SpacesBeforeTrailingComments: 2
+SpacesInAngles:  false
+SpacesInContainerLiterals: true
+SpacesInCStyleCastParentheses: false
+SpacesInParentheses: false
+SpacesInSquareBrackets: false
+Standard:        Auto
+TabWidth:        8
+UseTab:          Never
+...
+

.clang-tidy

@@ -0,0 +1,220 @@
+# list all enabled checks: clang-tidy -list-checks
+# list all checks: clang-tidy -checks='*' -list-checks
+# run checks on the cmd line: clang-tidy -checks='bugprone-*' *.cc (followed by all our includes, look it up in our wiki
+#
+Checks: '
+    -*,
+    bugprone-argument-comment,
+    bugprone-assert-side-effect,
+    bugprone-assignment-in-if-condition,
+    bugprone-bad-signal-to-kill-thread,
+    bugprone-bitwise-pointer-cast,
+    bugprone-bool-pointer-implicit-conversion,
+    bugprone-branch-clone,
+    bugprone-casting-through-void,
+    bugprone-chained-comparison,
+    bugprone-compare-pointer-to-member-virtual-function,
+    bugprone-copy-constructor-init,
+    bugprone-crtp-constructor-accessibility,
+    bugprone-dangling-handle,
+    bugprone-dynamic-static-initializers,
+    bugprone-empty-catch,
+    bugprone-exception-escape,
+    bugprone-fold-init-type,
+    bugprone-forward-declaration-namespace,
+    bugprone-forwarding-reference-overload,
+#    bugprone-implicit-widening-of-multiplication-result,
+    bugprone-inaccurate-erase,
+    bugprone-inc-dec-in-conditions,
+    bugprone-incorrect-enable-if,
+    bugprone-incorrect-enable-shared-from-this,
+    bugprone-incorrect-roundings,
+    bugprone-infinite-loop,
+    bugprone-integer-division,
+    bugprone-lambda-function-name,
+    bugprone-macro-parentheses,
+    bugprone-macro-repeated-side-effects,
+    bugprone-misplaced-operator-in-strlen-in-alloc,
+    bugprone-misplaced-pointer-arithmetic-in-alloc,
+    bugprone-misplaced-widening-cast,
+    bugprone-move-forwarding-reference,
+    bugprone-multiple-new-in-one-expression,
+    bugprone-multiple-statement-macro,
+    bugprone-no-escape,
+    bugprone-non-zero-enum-to-bool-conversion,
+    bugprone-nondeterministic-pointer-iteration-order,
+    bugprone-not-null-terminated-result,
+    bugprone-optional-value-conversion,
+    bugprone-parent-virtual-call,
+#    bugprone-pointer-arithmetic-on-polymorphic-object,
+    bugprone-posix-return,
+    bugprone-redundant-branch-condition,
+    bugprone-reserved-identifier,
+    bugprone-return-const-ref-from-parameter,
+    bugprone-shared-ptr-array-mismatch,
+    bugprone-signal-handler,
+    bugprone-signed-char-misuse,
+    bugprone-sizeof-container,
+    bugprone-sizeof-expression,
+    bugprone-spuriously-wake-up-functions,
+    bugprone-standalone-empty,
+    bugprone-string-constructor,
+    bugprone-string-integer-assignment,
+    bugprone-string-literal-with-embedded-nul,
+    bugprone-stringview-nullptr,
+    bugprone-suspicious-enum-usage,
+    bugprone-suspicious-include,
+    bugprone-suspicious-memory-comparison,
+    bugprone-suspicious-memset-usage,
+    bugprone-suspicious-missing-comma,
+    bugprone-suspicious-realloc-usage,
+    bugprone-suspicious-semicolon,
+    bugprone-suspicious-string-compare,
+    bugprone-suspicious-stringview-data-usage,
+    bugprone-swapped-arguments,
+    bugprone-switch-missing-default-case,
+    bugprone-tagged-union-member-count,
+    bugprone-terminating-continue,
+    bugprone-throw-keyword-missing,
+    bugprone-too-small-loop-variable,
+    bugprone-unchecked-optional-access,
+    bugprone-undefined-memory-manipulation,
+    bugprone-undelegated-constructor,
+    bugprone-unhandled-exception-at-new,
+    bugprone-unhandled-self-assignment,
+    bugprone-unique-ptr-array-mismatch,
+    bugprone-unsafe-functions,
+    bugprone-unused-local-non-trivial-variable,
+    bugprone-unused-raii,
+    bugprone-unused-return-value,
+    bugprone-use-after-move,
+    bugprone-virtual-near-miss,
+#    cppcoreguidelines-macro-usage,
+    cppcoreguidelines-prefer-member-initializer,
+#    cppcoreguidelines-pro-type-static-cast-downcast,
+    cppcoreguidelines-virtual-class-destructor,
+    google-build-using-namespace,
+    google-global-names-in-headers,
+    hicpp-avoid-goto,
+#    hicpp-braces-around-statements,
+    hicpp-deprecated-headers,
+    hicpp-exception-baseclass,
+    hicpp-explicit-conversions,
+    hicpp-function-size,
+    hicpp-ignored-remove-result,
+    hicpp-invalid-access-moved,
+    hicpp-member-init,
+    hicpp-move-const-arg,
+    hicpp-multiway-paths-covered,
+    hicpp-named-parameter,
+    hicpp-new-delete-operators,
+    hicpp-no-assembler,
+    hicpp-no-malloc,
+    hicpp-noexcept-move,
+    hicpp-signed-bitwise,
+    hicpp-special-member-functions,
+    hicpp-static-assert,
+    hicpp-undelegated-constructor,
+    hicpp-uppercase-literal-suffix,
+    hicpp-use-emplace,
+    hicpp-use-equals-default,
+    hicpp-use-equals-delete,
+    hicpp-use-noexcept,
+    hicpp-use-nullptr,
+    hicpp-use-override,
+    hicpp-vararg,
+    misc-confusable-identifiers,
+    misc-coroutine-hostile-raii,
+    misc-definitions-in-headers,
+    misc-header-include-cycle,
+    misc-misleading-bidirectional,
+    misc-misleading-identifier,
+    misc-misplaced-const,
+    misc-new-delete-overloads,
+    misc-no-recursion,
+    misc-non-copyable-objects,
+    misc-non-private-member-variables-in-classes,
+    misc-redundant-expression,
+    misc-static-assert,
+    misc-throw-by-value-catch-by-reference,
+    misc-unconventional-assign-operator,
+    misc-uniqueptr-reset-release,
+    misc-unused-alias-decls,
+    misc-unused-parameters,
+    misc-unused-using-decls,
+    misc-use-anonymous-namespace,
+    modernize-loop-convert,
+    modernize-redundant-void-arg,
+    modernize-use-bool-literals,
+    modernize-use-emplace,
+    modernize-use-equals-default,
+    modernize-use-nullptr,
+    modernize-use-using,
+#    performance-enum-size,
+    performance-faster-string-find,
+    performance-for-range-copy,
+    performance-implicit-conversion-in-loop,
+    performance-inefficient-algorithm,
+    performance-inefficient-string-concatenation,
+    performance-inefficient-vector-operation,
+    performance-move-const-arg,
+    performance-move-constructor-init,
+    performance-no-automatic-move,
+    performance-no-int-to-ptr,
+    performance-noexcept-destructor,
+    performance-noexcept-move-constructor,
+    performance-noexcept-swap,
+    performance-trivially-destructible,
+    performance-type-promotion-in-math-fn,
+    performance-unnecessary-copy-initialization,
+    performance-unnecessary-value-param,
+    readability-avoid-const-params-in-decls,
+    readability-avoid-nested-conditional-operator,
+    readability-avoid-return-with-void-value,
+    readability-avoid-unconditional-preprocessor-if,
+#    readability-braces-around-statements,
+    readability-const-return-type,
+    readability-container-contains,
+    readability-container-data-pointer,
+    readability-container-size-empty,
+#    readability-convert-member-functions-to-static,
+    readability-delete-null-pointer,
+    readability-duplicate-include,
+    readability-else-after-return,
+    readability-enum-initial-value,
+    readability-function-size,
+    readability-identifier-naming,
+    readability-inconsistent-declaration-parameter-name,
+    readability-isolate-declaration,
+    readability-make-member-function-const,
+#    readability-math-missing-parentheses,
+    readability-misleading-indentation,
+    readability-misplaced-array-index,
+    readability-named-parameter,
+    readability-non-const-parameter,
+    readability-operators-representation,
+    readability-qualified-auto,
+    readability-redundant-access-specifiers,
+    readability-redundant-casting,
+    readability-redundant-declaration,
+    readability-redundant-function-ptr-dereference,
+    readability-redundant-inline-specifier,
+    readability-redundant-member-init,
+    readability-redundant-preprocessor,
+    readability-redundant-smartptr-get,
+    readability-redundant-string-cstr,
+    readability-redundant-string-init,
+    readability-reference-to-constructed-temporary,
+    readability-simplify-subscript-expr,
+    readability-static-accessed-through-instance,
+    readability-static-definition-in-anonymous-namespace,
+    readability-string-compare,
+    readability-suspicious-call-argument,
+    readability-uniqueptr-delete-release,
+    readability-uppercase-literal-suffix,
+    readability-use-anyofallof,
+    readability-use-std-min-max
+    '
+
+CheckOptions:
+  readability-operators-representation.BinaryOperators: '&&;&=;&;|;~;!;!=;||;|=;^;^='

.gitignore

@@ -82,3 +82,11 @@ tmtags
 
 # For rubinius:
 *.rbc
+
+# root/G4 output files
+*.root
+*.macro
+
+# valgrind
+*.valgrind
+*.log

BcoQA/Fun4All_Gl1QA.C

@@ -0,0 +1,33 @@
+#include <ffarawmodules/Gl1BcoDump.h>
+
+#include <fun4all/Fun4AllServer.h>
+#include <fun4all/Fun4AllInputManager.h>
+
+#include <fun4allraw/Fun4AllPrdfInputManager.h>
+
+#include <Rtypes.h> // defines R__LOAD_LIBRARY macro for clang-tidy
+#include <TSystem.h>
+
+R__LOAD_LIBRARY(libfun4all.so)
+R__LOAD_LIBRARY(libfun4allraw.so)
+R__LOAD_LIBRARY(libffarawmodules.so)
+
+void Fun4All_Gl1QA(int nEvents = 0,
+		   const std::string &input_list = "gl1daq.list",
+		   const std::string &outfile = "gl1daq.root")
+{
+  Fun4AllServer *se = Fun4AllServer::instance();
+//  se->Verbosity(1);
+  Gl1BcoDump *gl1dmp = new Gl1BcoDump();
+  gl1dmp->OutFileName(outfile);
+  se->registerSubsystem(gl1dmp);
+  Fun4AllInputManager *in = new Fun4AllPrdfInputManager("PRDFin");
+  in->AddListFile(input_list);
+  se->registerInputManager(in);
+
+  se->run(nEvents);
+
+  se->End();
+  delete se;
+  gSystem->Exit(0);
+}

BcoQA/Fun4All_TpcQA.C

@@ -0,0 +1,33 @@
+#include <ffarawmodules/TpcBcoDump.h>
+
+#include <fun4all/Fun4AllServer.h>
+#include <fun4all/Fun4AllInputManager.h>
+
+#include <fun4allraw/Fun4AllPrdfInputManager.h>
+
+#include <Rtypes.h> // defines R__LOAD_LIBRARY macro for clang-tidy
+#include <TSystem.h>
+
+R__LOAD_LIBRARY(libfun4all.so)
+R__LOAD_LIBRARY(libfun4allraw.so)
+R__LOAD_LIBRARY(libffarawmodules.so)
+
+void Fun4All_TpcQA(int nEvents = 0,
+		   const std::string &input_list = "prdf.list",
+		   const std::string &outfile = "bcodiff.root")
+{
+  Fun4AllServer *se = Fun4AllServer::instance();
+//  se->Verbosity(1);
+  TpcBcoDump *tpcdmp = new TpcBcoDump();
+  tpcdmp->OutFileName(outfile);
+  se->registerSubsystem(tpcdmp);
+  Fun4AllInputManager *in = new Fun4AllPrdfInputManager("PRDFin");
+  in->AddListFile(input_list);
+  se->registerInputManager(in);
+
+  se->run(nEvents);
+
+  se->End();
+  delete se;
+  gSystem->Exit(0);
+}