GitHub - rhiju/rhiju_python: Rhiju Das' python scripts from https://svn.rosettacommons.org/source/workspaces/rhiju/python

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 231 Commits
MOVED_TO_ROSETTA_TOOLS		MOVED_TO_ROSETTA_TOOLS
bakerlab_old		bakerlab_old
boinc		boinc
casp10_scripts		casp10_scripts
casp9_scripts		casp9_scripts
casp_scripts		casp_scripts
cluster_util		cluster_util
dagman_old		dagman_old
pymol_pictures		pymol_pictures
rasmol		rasmol
.gitignore		.gitignore
RNApdb2xyz.py		RNApdb2xyz.py
TMalign.py		TMalign.py
USalign_OLD.py		USalign_OLD.py
add_nativetopcode_column.py		add_nativetopcode_column.py
align_based_on_structure.py		align_based_on_structure.py
alignfile2fasta.py		alignfile2fasta.py
alignfile_replacenames.py		alignfile_replacenames.py
all_vs_all.py		all_vs_all.py
amino_acids.py		amino_acids.py
amino_acids.pyc		amino_acids.pyc
analyze_bond_angles.py		analyze_bond_angles.py
analyze_bond_distances.py		analyze_bond_distances.py
average_coordinates.py		average_coordinates.py
awesome_topology_code.py		awesome_topology_code.py
backtrack_swa.py		backtrack_swa.py
barcode_frags.py		barcode_frags.py
beta2fasta.py		beta2fasta.py
blast.py		blast.py
blast2align.py		blast2align.py
blast2fasta.py		blast2fasta.py
bzip_oldfiles.py		bzip_oldfiles.py
calc_rg.py		calc_rg.py
calc_seq_similarity.py		calc_seq_similarity.py
cat_addendum_outfiles.py		cat_addendum_outfiles.py
cat_cst.py		cat_cst.py
cat_rna_structure.py		cat_rna_structure.py
catpdb.py		catpdb.py
centroid_build_dagman.py		centroid_build_dagman.py
charmm_minimize.py		charmm_minimize.py
charmm_score.py		charmm_score.py
charmm_superimpose.py		charmm_superimpose.py
check_arpwarp_rebuilding.py		check_arpwarp_rebuilding.py
check_bond_distances.py		check_bond_distances.py
check_cutpoints.py		check_cutpoints.py
check_sol_LLG.py		check_sol_LLG.py
check_symmetry_overlay.py		check_symmetry_overlay.py
check_symmetry_overlay2.py		check_symmetry_overlay2.py
check_symmetry_overlay_STOPPEDWORK.py		check_symmetry_overlay_STOPPEDWORK.py
clean_sc.py		clean_sc.py
cleanscorefile.py		cleanscorefile.py
cluster.py		cluster.py
cluster_and_extract_loop_jobs.py		cluster_and_extract_loop_jobs.py
cluster_command.py		cluster_command.py
cluster_homologs_iter_casp.py		cluster_homologs_iter_casp.py
cluster_rhiju.py		cluster_rhiju.py
cluster_rhiju_75inTOP.py		cluster_rhiju_75inTOP.py
cluster_rna.py		cluster_rna.py
cluster_score_stats.py		cluster_score_stats.py
cluster_submit.py		cluster_submit.py
cluster_swa_loop_job.py		cluster_swa_loop_job.py
cluster_tour.py		cluster_tour.py
cluster_tour_phil.py		cluster_tour_phil.py
collect_charmm_minimize_results.py		collect_charmm_minimize_results.py
collect_tinker_minimize_results.py		collect_tinker_minimize_results.py
color_PDB_by_data.py		color_PDB_by_data.py
combine_models_casp.py		combine_models_casp.py
combine_new_plots.py		combine_new_plots.py
compare_CASP7_native.py		compare_CASP7_native.py
compare_base_pair_classifications.py		compare_base_pair_classifications.py
compare_bestoffive_rhiju.py		compare_bestoffive_rhiju.py
compile_sequence_recovery.py		compile_sequence_recovery.py
compose_score_silent.py		compose_score_silent.py
condor_DAMMIN.py		condor_DAMMIN.py
condor_submit.py		condor_submit.py
conseq_parse.py		conseq_parse.py
convert_to_silent_file.py		convert_to_silent_file.py
copyphaser_to_cluster.py		copyphaser_to_cluster.py
create_motif_jobs_ORIGINAL.py		create_motif_jobs_ORIGINAL.py
crossstrand_barcode.py		crossstrand_barcode.py
ct_to_structure.py		ct_to_structure.py
cut_in_half.py		cut_in_half.py
damaver.py		damaver.py
decide_termini_truncate.py		decide_termini_truncate.py
define_strand_boundaries.py		define_strand_boundaries.py
domain_parse_submission_files.py		domain_parse_submission_files.py
exclude_scop_homs.py		exclude_scop_homs.py
export_frags_rhiju.py		export_frags_rhiju.py
extract_cluster_centers.py		extract_cluster_centers.py
extract_cluster_centers_outfiles.py		extract_cluster_centers_outfiles.py
extract_cluster_centers_outfiles2.py		extract_cluster_centers_outfiles2.py
extract_cluster_centers_stupid.py		extract_cluster_centers_stupid.py
extract_cluster_lowE.py		extract_cluster_lowE.py
extract_cluster_members.py		extract_cluster_members.py
extract_cluster_members_outfile.py		extract_cluster_members_outfile.py
extract_first_decoys.py		extract_first_decoys.py
extract_first_decoys_outfile.py		extract_first_decoys_outfile.py
extract_floating_helix_stats_3DNA.py		extract_floating_helix_stats_3DNA.py
extract_helix_parameters_from_3DNA.py		extract_helix_parameters_from_3DNA.py
extract_loops_with_3DNA.py		extract_loops_with_3DNA.py