Repositories list

• weissmanlab.github.io

  Public
  Weissman lab website

  SCSS

  •

  MIT License

  •35k•0•0•0•Updated Mar 25, 2026Mar 25, 2026

• synchronized-sex-dispersal

  Public
  Code for the Paper 'Population structure can reduce clonal interference when sexual reproduction and dispersal are synchronized'

  Mathematica

  •0•0•0•0•Updated Mar 12, 2026Mar 12, 2026

• beta_structure

  Public
  Coalescent simulations in msprime

  Python

  •0•1•0•0•Updated Mar 10, 2026Mar 10, 2026

• decotur

  Public
  R

  •1•1•0•0•Updated Feb 12, 2026Feb 12, 2026

• msprime

  Public
  Simulate genealogical trees and genomic sequence data using population genetic models

  Python

  •

  GNU General Public License v3.0

  •92•0•0•0•Updated Dec 4, 2025Dec 4, 2025

• malaria_mdr

  Public
  Agent-based simulation investigating the effect of recombination on the rate of emergence of multi-drug resistance in Malaria.

  C++

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Nov 25, 2025Nov 25, 2025

• msprime-c

  Public
  Simulate genealogical trees and genomic sequence data using population genetic models

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •92•0•0•0•Updated Jul 21, 2025Jul 21, 2025

• Recombination_MRCA

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Jul 14, 2025Jul 14, 2025

• Genetic_Diversity_Space

  Public
  Repo for "The allele frequency spectrum in spatially structured populations"

  Jupyter Notebook

  •2•0•0•0•Updated Jul 11, 2025Jul 11, 2025

• rotation_erekle

  Public
  data files and code for figure 1,2,3,4

  Python

  •0•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• malaria_proj

  Public
  C++

  •0•0•0•0•Updated Sep 7, 2024Sep 7, 2024

• SFS_spatial_sweep_1d_Genetics

  Public archive
  Code for Genetics figures

  Jupyter Notebook

  •1•0•0•0•Updated Dec 16, 2023Dec 16, 2023

• VOC_emergence

  Public
  Modeling the emergence of SARS-CoV-2 VOCs

  Mathematica

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated Aug 8, 2023Aug 8, 2023

• magic

  Public
  Minimal Assumption Genomic Inference of Coalescence

  Jupyter Notebook

  •

  MIT License

  •2•14•2•0•Updated Aug 8, 2023Aug 8, 2023

• SFS_spatial_sweep

  Public
  Jupyter Notebook

  •1•0•0•0•Updated Mar 8, 2023Mar 8, 2023

• DeCoTUR_manuscript_code

  Public
  0•0•0•0•Updated Feb 2, 2023Feb 2, 2023

• Robust_evolution_of_altruism_based_on_similarity_of_complex_phenotypes

  Public
  Simulation for the evolution of altruistic behavior where individuals decide to donate to each other by determining similarity of multidimensional phenotype

  C

  •0•0•0•0•Updated Jun 9, 2022Jun 9, 2022

• Long_Range_Dispersal

  Public
  Mathematica

  •0•0•0•0•Updated Jun 7, 2022Jun 7, 2022

• Valley_Crossing

  Public
  Valley Crossing for covid

  Mathematica

  •

  GNU General Public License v3.0

  •1•0•0•0•Updated May 12, 2022May 12, 2022

• BB_bottleneck

  Public
  R

  •8•7•2•0•Updated May 10, 2021May 10, 2021

• two-alleles-waves-regime-

  Public
  Two interfering alleles, both are waves

  C++

  •1•0•0•0•Updated Feb 18, 2019Feb 18, 2019

• two-alleles-branching-regime

  Public
  Interference between a sweeping allele that propagates as a wave and an allele who is in the branching regime

  C++

  •1•0•0•0•Updated Feb 18, 2019Feb 18, 2019

• Coalescent-Simulations

  Public
  Simulations of different coalescent models

  Python

  •0•0•0•0•Updated Nov 1, 2018Nov 1, 2018

• magic-beta

  Public
  placeholder

  0•0•0•0•Updated Jun 22, 2017Jun 22, 2017

• Competition-between-valley-crossing-and-uphill-mutations-in-asexual-populations

  Public
  Python

  •1•0•0•0•Updated Mar 31, 2017Mar 31, 2017