Repositories list

• datasets_harmonization

  Public
  Harmonization of DNA methylation datasets

  R

  •

  MIT License

  •0•0•0•0•Updated Feb 4, 2026Feb 4, 2026

• ad-cr

  Public
  AD CR Analysis

  R

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  MIT License

  •0•0•0•0•Updated Jan 18, 2026Jan 18, 2026

• multiRF-vs

  Public
  Code for multi-omics random forest variable selection

  HTML

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  GNU General Public License v3.0

  •1•1•0•0•Updated Aug 25, 2025Aug 25, 2025

• DNAm-and-LE8

  Public
  AD CR Nomas

  R

  •

  MIT License

  •0•0•0•0•Updated Jul 15, 2025Jul 15, 2025

• AD-Aging-blood-sample-analysis

  Public
  Code for The Aging Epigenome: Integrative Analyses Reveal Functional and Genetic Links to Alzheimer’s Disease

  R

  •

  MIT License

  •0•0•0•0•Updated Jun 5, 2025Jun 5, 2025

• blood-dnam-and-incident-dementia

  Public
  Blood DNA Methylation Signature for Incident Dementia: Evidence from Longitudinal Cohorts

  R

  •0•0•0•0•Updated Apr 7, 2025Apr 7, 2025

• MIAMI.AD

  Public
  A repository of the code for the MIAMI-AD shiny server.

  R

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  MIT License

  •0•1•0•0•Updated Feb 25, 2025Feb 25, 2025

• AD-aging-brain-samples-analysis

  Public
  R

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  MIT License

  •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• Organoid-Prediction

  Public
  Code for Colorectal Tumor Organoid Network Analysis and Prediction

  R

  •1•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• DNAm-and-RI

  Public
  DNA Methylation Signature of a Lifestyle-based Resilience Index for Cognitive Health

  R

  •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

• coMethDMR

  Public
  Detect Regions of Concurrent Differential Methylation

  R

  •2•7•12•0•Updated Oct 3, 2024Oct 3, 2024

• coMethDMR_data

  Public
  R

  •0•0•1•0•Updated Oct 2, 2024Oct 2, 2024

• TNBC-meta-analysis

  Public
  Code for TNBC meta-analysis

  R

  •2•1•0•0•Updated Aug 6, 2024Aug 6, 2024

• ranktreeEnsemble

  Public
  R

  •2•1•0•0•Updated May 24, 2024May 24, 2024

• ad-meta-analysis

  Public
  R

  •2•8•0•0•Updated Apr 29, 2024Apr 29, 2024

• DNAm-reliability

  Public
  Critical evaluation of the reliability of DNA methylation probes on the Illumina MethylationEPIC BeadChip microarrays for dementia research

  R

  •0•0•0•0•Updated Apr 3, 2024Apr 3, 2024

• MethReg

  Public
  An R package to assess the regulatory potential of DNA methylation regions or sites on gene transcription

  R

  •

  Other

  •2•5•5•0•Updated Jan 25, 2024Jan 25, 2024

• HIH

  Public
  R

  •1•0•0•0•Updated Apr 26, 2023Apr 26, 2023

• LRinteractions

  Public
  R

  •0•0•0•0•Updated Apr 26, 2023Apr 26, 2023

• AD-ATN-biomarkers-and-DNAm

  Public
  Distinct CSF biomarker-associated DNA methylation in Alzheimer's disease and cognitively normal subjects

  R

  •1•1•0•0•Updated Mar 25, 2023Mar 25, 2023

• rnaEditr

  Public
  R

  •1•3•1•0•Updated Nov 24, 2022Nov 24, 2022

• AD-meta-analysis-blood-by-sex

  Public
  Distinct sex-specific DNA methylation differences in Alzheimer’s disease

  R

  •1•0•0•0•Updated Aug 23, 2022Aug 23, 2022

• coMethDMR_BioC2022

  Public
  coMethDMR Workshop for BioC2022 in Seattle, WA

  HTML

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  GNU General Public License v3.0

  •3•2•0•0•Updated Jul 27, 2022Jul 27, 2022

• AD-meta-analysis-blood

  Public
  AD meta analysis blood

  R

  •2•1•0•0•Updated Jul 4, 2022Jul 4, 2022

• TNBC_analysis

  Public
  Code to reproduce TNBC analysis and figures

  R

  •10•24•1•0•Updated Jun 13, 2022Jun 13, 2022

• hidRF

  Public
  R

  •0•0•0•0•Updated Mar 16, 2022Mar 16, 2022

• ad-meta-analysis-by-sex

  Public
  A sex specific meta analysis for AD

  R

  •0•0•0•0•Updated Jan 28, 2022Jan 28, 2022

• pathwayMultiomics

  Public
  An R Package to Implement the Pathway-Based MiniMax Statistic for Multi-Omics Analysis

  R

  •2•6•2•0•Updated Nov 22, 2021Nov 22, 2021

• pathwayMultiomics_manuscript_supplement

  Public
  Repository for supplemental material of the pathwayPCA MultiOmics manuscript

  R

  •3•0•0•0•Updated Nov 12, 2021Nov 12, 2021

• MethReg_supplemental

  Public
  Code used in MethReg article

  R

  •0•1•0•0•Updated Aug 13, 2021Aug 13, 2021