Repositories list

• CAPTVRED

  Public
  Analysis pipeline for capture-based viral metagenomics projects.

  HTML

  •

  GNU General Public License v3.0

  •0•3•0•0•Updated Jan 28, 2026Jan 28, 2026

• 2022_NatComm_BImethods

  Public
  Bioinformatics supplementary material for Pascual-Carreras et al, 2022.

  R

  •0•1•0•0•Updated Jan 19, 2023Jan 19, 2023

• CGL

  Public
  Generic modules for the Computational Genomics Lab

  Perl

  •1•1•0•0•Updated May 30, 2019May 30, 2019

• PlanNET

  Public
  Website to explore predicted planarian protein-protein interactions.

  HTML

  •1•0•0•0•Updated Jan 23, 2019Jan 23, 2019

• ggdisplot

  Public
  Scatter plot with two density plots.

  R

  •1•0•0•0•Updated Sep 5, 2018Sep 5, 2018

• seqlenplot

  Public
  R script to plot a comparison of protein and transcript/DNA length.

  R

  •1•1•0•0•Updated Jun 21, 2018Jun 21, 2018

• graph2neo4j

  Public
  Scripts to create csv files for uploading interaction graphs to neo4j.

  Perl

  •0•0•0•0•Updated May 8, 2018May 8, 2018

• ppaxe

  Public
  Text mining tool to retrieve protein-protein interactions

  Python

  •

  GNU General Public License v3.0

  •5•0•0•0•Updated May 7, 2018May 7, 2018

• expression_to_graph

  Public
  Scripts to map expression information onto an svg graph

  Perl

  •1•0•0•0•Updated Dec 13, 2017Dec 13, 2017

• brh_coverage

  Public
  Simple R script to make coverage plots.

  R

  •1•0•0•0•Updated Sep 28, 2017Sep 28, 2017

• PlanNET-software

  Public
  Scripts to predict the PlanNET networks.

  Perl

  •1•0•0•0•Updated Sep 28, 2017Sep 28, 2017

• graphcompare

  Public
  Application to compare graph files.

  Perl

  •

  GNU General Public License v3.0

  •3•0•0•0•Updated Jun 2, 2017Jun 2, 2017