docs: add documentation comments to JSON schema types#1757
Merged
ivan-aksamentov merged 11 commits intomasterfrom Mar 5, 2026
Merged
docs: add documentation comments to JSON schema types#1757ivan-aksamentov merged 11 commits intomasterfrom
ivan-aksamentov merged 11 commits intomasterfrom
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…esultsJson, NextcladeErrorOutputs - Add field-level doc comments to all ~40 NextcladeOutputs fields, PeptideWarning, PhenotypeValue - Add field-level doc comments to ResultsJson fields - Add struct and field doc comments to NextcladeErrorOutputs - Regenerate JSON/YAML schema files with new description fields
- QcStatus, QcResult, QcResultMissingData, QcResultMixedSites - QcResultPrivateMutations, QcResultSnpClusters, ClusteredSnp - QcResultFrameShifts, QcResultStopCodons
- Fix `//` to `///` on QcRulesConfigMixedSites so description propagates to schema - Add field-level doc comments to all QC config structs: QcRulesConfigMissingData, QcRulesConfigMixedSites, QcRulesConfigPrivateMutations, QcRulesConfigSnpClusters, QcRulesConfigFrameShifts, QcRulesConfigStopCodons, FrameShiftLocation, StopCodonLocation, QcConfig
This was referenced Mar 5, 2026
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Add doc comments to Rust structs used for JSON schema generation, improving documentation for pathogen.json configuration, dataset index structures, QC rules, output formats, and Auspice tree extensions. The doc comments propagate to generated JSON/YAML schema files via schemars, making schemas self-documenting for dataset authors and API consumers.