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Merged
tomaszaba merged 3 commits into from
Feb 25, 2026
Merged

Tomaszaba/issue37 #39

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67d2e49
make DoS and DoB work in mfaz wrangling
tomaszaba Feb 25, 2026
2f1fa4c
make DoS and DoB work in wrangling for combined prev
tomaszaba Feb 25, 2026
6c20e52
Closes #37
tomaszaba Feb 25, 2026
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77 changes: 65 additions & 12 deletions R/module-data-wrangling.R
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Original file line number Diff line number Diff line change
Expand Up @@ -175,31 +175,67 @@ module_server_wrangling <- function(id, data) {
w <- switch(EXPR = input$wrangle,
"wfhz" = {
shiny::req(input$sex, input$weight, input$height)
data() |>
dplyr::rename(

### Wrangle age dynamically ----
df <- if (nzchar(input$dos)) {
dplyr::mutate(
.data = data(),
dos = as.Date(!!rlang::sym(input$dos), format = "%d/%m/%Y"),
dob = as.Date(!!rlang::sym(input$dob), format = "%d/%m/%Y"),
age = as.numeric(!!rlang::sym(input$age)),
sex = !!rlang::sym(input$sex),
weight = !!rlang::sym(input$weight),
height = !!rlang::sym(input$height)
) |>
mwana::mw_wrangle_age(.data$dos, .data$dob, .data$age)
} else {
dplyr::mutate(
.data = data(),
dos = NULL,
dob = NULL,
sex = !!rlang::sym(input$sex),
weight = !!rlang::sym(input$weight),
height = !!rlang::sym(input$height)
)
}

### Wrangle WFHZ data ----
df |>
mwana::mw_wrangle_wfhz(
sex = .data$sex,
.recode_sex = TRUE,
weight = .data$weight,
height = .data$height
)
},

"mfaz" = {
shiny::req(input$age, input$sex, input$muac)

data() |>
### Wrangle age dynamically ----
df <- if (nzchar(input$dos)) {
dplyr::mutate(
muac = mwana::recode_muac(x = !!rlang::sym(input$muac), .to = "cm")
.data = data(),
muac = mwana::recode_muac(!!rlang::sym(input$muac), "cm"),
dos = as.Date(!!rlang::sym(input$dos), format = "%d/%m/%Y"),
dob = as.Date(!!rlang::sym(input$dob), format = "%d/%m/%Y"),
age = as.numeric(!!rlang::sym(input$age)),
sex = !!rlang::sym(input$sex)
) |>
dplyr::rename(
age = !!rlang::sym(input$age),
mwana::mw_wrangle_age(.data$dos, .data$dob, .data$age)
} else {
dplyr::mutate(
.data = data(),
muac = mwana::recode_muac(!!rlang::sym(input$muac), "cm"),
dos = NULL,
dob = NULL,
sex = !!rlang::sym(input$sex)
) |>
mwana::mw_wrangle_age(dos = NULL, dob = NULL, age = .data$age) |>
mwana::mw_wrangle_age(NULL, NULL, .data$age)
}

### Wrangle MUAC ----
df |>
mwana::mw_wrangle_muac(
sex = .data$sex,
.recode_sex = TRUE,
Expand Down Expand Up @@ -232,23 +268,40 @@ module_server_wrangling <- function(id, data) {
input$muac
)

data() |>
### Wrangle age dynamically ----
df <- if (nzchar(input$dos)) {
dplyr::mutate(
muac = mwana::recode_muac(x = !!rlang::sym(input$muac), .to = "cm")
.data = data(),
muac = mwana::recode_muac(!!rlang::sym(input$muac), "cm"),
dos = as.Date(!!rlang::sym(input$dos), format = "%d/%m/%Y"),
dob = as.Date(!!rlang::sym(input$dob), format = "%d/%m/%Y"),
age = as.numeric(!!rlang::sym(input$age)),
sex = !!rlang::sym(input$sex),
weight = !!rlang::sym(input$weight),
height = !!rlang::sym(input$height)
) |>
dplyr::rename(
age = !!rlang::sym(input$age),
mwana::mw_wrangle_age(.data$dos, .data$dob, .data$age)
} else {
dplyr::mutate(
.data = data(),
muac = mwana::recode_muac(!!rlang::sym(input$muac), "cm"),
dos = NULL,
dob = NULL,
sex = !!rlang::sym(input$sex),
weight = !!rlang::sym(input$weight),
height = !!rlang::sym(input$height)
) |>
mwana::mw_wrangle_age(NULL, NULL, .data$age)
}

### Wrangle WHZ and MUAC data ----
df |>
mwana::mw_wrangle_wfhz(
sex = .data$sex,
.recode_sex = TRUE,
weight = .data$weight,
height = .data$height
) |>
mwana::mw_wrangle_age(dos = NULL, dob = NULL, age = .data$age) |>
mwana::mw_wrangle_muac(
sex = .data$sex,
.recode_sex = FALSE,
Expand Down
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