How to train a Deep Neural Network (DNN)?

Tutorial for IGVF-MPRA-Workshop-2024, Lübeck, Germany

References

1. Agarwal, V., Inoue, F., Schubach, M., Martin, B.K., Dash, P.M., Zhang, Z., Sohota, A., Noble, W.S., Yardimci, G.G., Kircher, M. and Shendure, J., 2023. Massively parallel characterization of transcriptional regulatory elements in three diverse human cell types. bioRxiv (2023) - https://www.biorxiv.org/content/10.1101/2023.03.05.531189v1
2. de Almeida, B.P., Reiter, F., Pagani, M. et al. DeepSTARR predicts enhancer activity from DNA sequence and enables the de novo design of synthetic enhancers. Nat Genet 54, 613–624 (2022) - https://www.nature.com/articles/s41588-022-01048-5