GitHub - iuliaL/dna_sequencing

Code and comments as I am going through the Algorithms for DNA Sequencing course.

Name		Name	Last commit message	Last commit date
Latest commit History 22 Commits
AQP3 fastas		AQP3 fastas
lib		lib
.gitignore		.gitignore
ApproximatePatternMatching.py		ApproximatePatternMatching.py
BaseQualities.py		BaseQualities.py
BoyerMooreMatching.py		BoyerMooreMatching.py
De_Bruijn_Graph.py		De_Bruijn_Graph.py
ERR037900_1.first1000.fastq		ERR037900_1.first1000.fastq
ERR266411_1.for_asm.fastq		ERR266411_1.for_asm.fastq
EditDistance.py		EditDistance.py
GlobalAlignment.py		GlobalAlignment.py
HammingDistance.py		HammingDistance.py
Indexing.py		Indexing.py
NaiveExactPatternMatching.py		NaiveExactPatternMatching.py
Overlap.py		Overlap.py
README.md		README.md
ReverseComplement.py		ReverseComplement.py
SRR835775_1.first1000.fastq		SRR835775_1.first1000.fastq
ShortestCommonSuperstring.py		ShortestCommonSuperstring.py
StrandAwarePatternMatching.py		StrandAwarePatternMatching.py
chr1.GRCh38.excerpt.fasta		chr1.GRCh38.excerpt.fasta
in_file.py		in_file.py
lambda_virus.fa		lambda_virus.fa
mystery_virus_reads.fq		mystery_virus_reads.fq
phix.fa		phix.fa
phix_genome_reads.fastq		phix_genome_reads.fastq
sequencers.ipynb		sequencers.ipynb

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