IMP_Toolbox

Note

If you can not find any of the scripts you have previously used from IMP_Toolbox in the main branch , please check in the archive branch.

• See Modeling with IMP for helpful tips while starting.

• To use IMP_Toolbox, clone this repository and add the path to ~/.bash_profile. You can then use it as a module.

# replace the path and add it at the end of ~/.bash_profile
export PYTHONPATH=/path/to/IMP_Toolbox:$PYTHONPATH

• Install the required packages from requirements.txt. You need Python >=3.12.

conda install --file requirements.txt

May the light of Durin's day shine upon those who choose this path.

Installation

• Use the following command in terminal.
  (bash install_imp.sh </path/to/imp-install/> <num-cores> <mode> <imp_version>)

bash install_imp.sh /path/$USER/IMP_OMG 16 tarball 2.24.0

# or if using conda
bash install_imp_conda.sh imp_omg /path/$USER/IMP_OMG 16 tarball 2.24.0

• mode can be "github" or "tarball".

• If using "github" mode, either the tag (tag ~ IMP release version) or branch name can be used for imp_version.

• If custom module is being used, you will prompted to provide it's path. Currently only supports installing one custom module.

License

CC BY-SA 4.0 This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License.