GitHub - genome/docker-cle: Docker containerization for the CLE

Docker containerization of the tools needed for CLE

Name		Name	Last commit message	Last commit date
Latest commit History 236 Commits
Dockerfile		Dockerfile
Downstream.pm		Downstream.pm
README.md		README.md
Wildtype.pm		Wildtype.pm
add_annotations_to_table_helper.py		add_annotations_to_table_helper.py
add_bam_readcount_to_vcf_helper.py		add_bam_readcount_to_vcf_helper.py
add_strelka_gt.pl		add_strelka_gt.pl
alignment_helper.sh		alignment_helper.sh
bam_readcount_helper.py		bam_readcount_helper.py
docm_and_coding_indel_selection.pl		docm_and_coding_indel_selection.pl
docm_filter.pl		docm_filter.pl
intervals_to_bed.pl		intervals_to_bed.pl
markduplicates_helper.sh		markduplicates_helper.sh
pindel_helper.pl		pindel_helper.pl
single_sample_docm_filter.pl		single_sample_docm_filter.pl
somatic_indelfilter.pl		somatic_indelfilter.pl
split_interval_list_helper.pl		split_interval_list_helper.pl
split_interval_list_to_bed_helper.pl		split_interval_list_to_bed_helper.pl
strelka_helper.pl		strelka_helper.pl
umi_alignment.sh		umi_alignment.sh
umi_realignment.sh		umi_realignment.sh
varscan_germline_helper.sh		varscan_germline_helper.sh
varscan_helper.sh		varscan_helper.sh
vcf_check.pl		vcf_check.pl
write_pindel_filter_config.pl		write_pindel_filter_config.pl

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