feat: lexicon manifests property and upstream sync#89
Merged
maxine-at-forecast merged 2 commits intodevelopfrom Apr 4, 2026
Merged
feat: lexicon manifests property and upstream sync#89maxine-at-forecast merged 2 commits intodevelopfrom
maxine-at-forecast merged 2 commits intodevelopfrom
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Add shardManifestRef def and optional manifests array to science.alt.dataset.entry lexicon, aligning the JSON spec with the existing Python types (ShardManifestRef, LexDatasetEntry.manifests). Each manifest ref pairs a shard with its header blob (JSON metadata) and optional Parquet samples blob for query-based access. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Replace broken sync-lexicons recipe (was copying flat lexicons/*.json) with two recipes: - just sync-lexicons: fetches latest from forecast-bio/atdata-lexicon via gh API tarball, syncs to both vendored and package directories. Supports ref= parameter for pinning to a tag/branch. - just sync-lexicons-local: offline vendor→package sync (no network). Test recipe now uses sync-lexicons-local to avoid network dependency. Updated CLAUDE.md with the new commands. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
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Summary
shardManifestRefdef and optionalmanifestsarray toscience.alt.dataset.entrylexicon, aligning the JSON spec with existing Python types (ShardManifestRef,LexDatasetEntry.manifests)just sync-lexiconsrecipe with proper upstream fetch fromforecast-bio/atdata-lexiconviaghAPI tarballjust sync-lexicons-localfor offline vendor→package syncCloses crosslink #4, #6, #13, #14.
Test plan
just sync-lexiconsfetches from atdata-lexicon and syncs both copies🤖 Generated with Claude Code