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TCL scripts for taking snapshots from molecular simulation trajectories

A snapshot from simulations of self assembly of bacterial microcompratments

Load the dcd trajectory

vmd sd*.mol2 sd*.dcd

In TKconsole:

play take_snap.tcl

Go to last frame

CapsidPolymer

Then go to the selected frame

Zoom in and make the view as desired

Then

display resize 1000 10000 Capsidpolymer

Choose a frame number as part of the filename

onesnap framenumber

To convert tga files to jpg:

Close vmd

In the folder that you have tga files run

bash convert.sh

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