emdgroup · tobiasploetz · May 19, 2025 · May 20, 2025 · May 20, 2025 · May 21, 2025
@@ -10,7 +10,7 @@ anyio==4.9.0
     #   jupyter-server
 appnope==0.1.4 ; sys_platform == 'darwin'
     # via ipykernel
-argon2-cffi==23.1.0
+argon2-cffi==25.1.0
     # via jupyter-server
 argon2-cffi-bindings==21.2.0
     # via argon2-cffi
@@ -47,9 +47,9 @@ blinker==1.9.0
     # via streamlit
 boolean-py==5.0
     # via license-expression
-boto3==1.38.20
+boto3==1.38.29
     # via baybe (pyproject.toml)
-botocore==1.38.20
+botocore==1.38.29
     # via
     #   boto3
     #   s3transfer
@@ -61,7 +61,7 @@ cachetools==5.5.2
     # via
     #   streamlit
     #   tox
-cattrs==24.1.3
+cattrs==25.1.0
     # via baybe (pyproject.toml)
 certifi==2025.4.26
     # via
@@ -103,7 +103,7 @@ comm==0.2.2
     #   ipywidgets
 contourpy==1.3.2
     # via matplotlib
-coverage==7.8.0
+coverage==7.8.2
     # via pytest-cov
 cycler==0.12.1
     # via matplotlib
@@ -165,13 +165,13 @@ flake8==7.2.0
     # via baybe (pyproject.toml)
 flatbuffers==25.2.10
     # via onnxruntime
-fonttools==4.58.0
+fonttools==4.58.1
     # via matplotlib
 formulaic==1.1.1
     # via lifelines
 fqdn==1.5.1
     # via jsonschema
-fsspec==2025.5.0
+fsspec==2025.5.1
     # via
     #   dask
     #   huggingface-hub
@@ -192,7 +192,7 @@ gpytorch==1.14
     # via
     #   baybe (pyproject.toml)
     #   botorch
-grpcio==1.71.0
+grpcio==1.72.1
     # via opentelemetry-exporter-otlp-proto-grpc
 h11==0.16.0
     # via httpcore
@@ -202,17 +202,19 @@ h5py==3.13.0
     # via
     #   h5netcdf
     #   xyzpy
+hf-xet==1.1.3 ; platform_machine == 'aarch64' or platform_machine == 'amd64' or platform_machine == 'arm64' or platform_machine == 'x86_64'
+    # via huggingface-hub
 httpcore==1.0.9
     # via httpx
 httpx==0.28.1
     # via jupyterlab
-huggingface-hub==0.31.4
+huggingface-hub==0.32.4
     # via scikit-fingerprints
 humanfriendly==10.0
     # via coloredlogs
-hypothesis==6.131.20
+hypothesis==6.135.0
     # via baybe (pyproject.toml)
-identify==2.6.10
+identify==2.6.12
     # via pre-commit
 idna==3.10
     # via
@@ -237,12 +239,12 @@ ipykernel==6.29.5
     #   jupyter
     #   jupyter-console
     #   jupyterlab
-ipython==8.36.0 ; python_full_version < '3.11'
+ipython==8.37.0 ; python_full_version < '3.11'
     # via
     #   ipykernel
     #   ipywidgets
     #   jupyter-console
-ipython==9.2.0 ; python_full_version >= '3.11'
+ipython==9.3.0 ; python_full_version >= '3.11'
     # via
     #   ipykernel
     #   ipywidgets
@@ -274,7 +276,7 @@ jmespath==1.0.1
     # via
     #   boto3
     #   botocore
-joblib==1.5.0
+joblib==1.5.1
     # via
     #   baybe (pyproject.toml)
     #   scikit-fingerprints
@@ -284,7 +286,7 @@ json5==0.12.0
     # via jupyterlab-server
 jsonpointer==3.0.0
     # via jsonschema
-jsonschema==4.23.0
+jsonschema==4.24.0
     # via
     #   altair
     #   jupyter-events
@@ -302,7 +304,7 @@ jupyter-client==8.6.3
     #   nbclient
 jupyter-console==6.6.3
     # via jupyter
-jupyter-core==5.7.2
+jupyter-core==5.8.1
     # via
     #   ipykernel
     #   jupyter-client
@@ -325,7 +327,7 @@ jupyter-server==2.16.0
     #   notebook-shim
 jupyter-server-terminals==0.5.3
     # via jupyter-server
-jupyterlab==4.4.2
+jupyterlab==4.4.3
     # via
     #   jupyter
     #   notebook
@@ -337,7 +339,7 @@ jupyterlab-server==2.27.3
     #   notebook
 jupyterlab-widgets==3.0.15
     # via ipywidgets
-jupytext==1.17.1
+jupytext==1.17.2
     # via baybe (pyproject.toml)
 kiwisolver==1.4.8
     # via matplotlib
@@ -403,15 +405,15 @@ msgpack==1.1.0
     # via cachecontrol
 multipledispatch==1.0.0
     # via botorch
-mypy==1.15.0
+mypy==1.16.0
     # via baybe (pyproject.toml)
 mypy-extensions==1.1.0
     # via
     #   mypy
     #   typing-inspect
 myst-parser==4.0.1
     # via baybe (pyproject.toml)
-narwhals==1.40.0
+narwhals==1.41.0
     # via
     #   altair
     #   plotly
@@ -429,16 +431,21 @@ nbformat==5.10.4
     #   nbconvert
 nest-asyncio==1.6.0
     # via ipykernel
-networkx==3.4.2
+networkx==3.4.2 ; python_full_version < '3.11'
     # via
     #   mordredcommunity
     #   scikit-image
     #   torch
-ngboost==0.5.5
+networkx==3.5 ; python_full_version >= '3.11'
+    # via
+    #   mordredcommunity
+    #   scikit-image
+    #   torch
+ngboost==0.5.6
     # via baybe (pyproject.toml)
 nodeenv==1.9.1
     # via pre-commit
-notebook==7.4.2
+notebook==7.4.3
     # via jupyter
 notebook-shim==0.2.4
     # via
@@ -465,7 +472,6 @@ numpy==2.2.6
     #   ngboost
     #   numba
     #   onnx
-    #   onnxconverter-common
     #   onnxruntime
     #   pandas
     #   pandas-stubs
@@ -523,10 +529,7 @@ nvidia-nvtx-cu12==12.6.77 ; platform_machine == 'x86_64' and sys_platform == 'li
 onnx==1.18.0
     # via
     #   baybe (pyproject.toml)
-    #   onnxconverter-common
     #   skl2onnx
-onnxconverter-common==1.13.0
-    # via skl2onnx
 onnxruntime==1.22.0
     # via baybe (pyproject.toml)
 openpyxl==3.1.5
@@ -587,7 +590,6 @@ packaging==24.2
     #   matplotlib
     #   mordredcommunity
     #   nbconvert
-    #   onnxconverter-common
     #   onnxruntime
     #   pip-audit
     #   pip-requirements-parser
@@ -617,7 +619,7 @@ pandas==2.2.3
     #   xyzpy
 pandas-flavor==0.7.0
     # via descriptastorus
-pandas-stubs==2.2.3.250308
+pandas-stubs==2.2.3.250527
     # via
     #   baybe (pyproject.toml)
     #   types-seaborn
@@ -627,6 +629,8 @@ parso==0.8.4
     # via jedi
 partd==1.4.2
     # via dask
+pathspec==0.12.1
+    # via mypy
 pexpect==4.9.0 ; sys_platform != 'emscripten' and sys_platform != 'win32'
     # via ipython
 pillow==11.2.1
@@ -651,27 +655,26 @@ platformdirs==4.3.8
     #   pip-audit
     #   tox
     #   virtualenv
-plotly==6.1.1
+plotly==6.1.2
     # via baybe (pyproject.toml)
 pluggy==1.6.0
     # via
     #   pytest
     #   tox
-polars==1.29.0
+polars==1.30.0
     # via baybe (pyproject.toml)
 pre-commit==3.7.1
     # via baybe (pyproject.toml)
-prometheus-client==0.22.0
+prometheus-client==0.22.1
     # via jupyter-server
 prompt-toolkit==3.0.51
     # via
     #   ipython
     #   jupyter-console
-protobuf==5.29.4
+protobuf==5.29.5
     # via
     #   googleapis-common-protos
     #   onnx
-    #   onnxconverter-common
     #   onnxruntime
     #   opentelemetry-proto
     #   streamlit
@@ -712,6 +715,7 @@ pygments==2.19.1
     #   ipython-pygments-lexers
     #   jupyter-console
     #   nbconvert
+    #   pytest
     #   rich
     #   sphinx
 pyparsing==3.2.3
@@ -728,7 +732,7 @@ pyro-api==0.1.2
     # via pyro-ppl
 pyro-ppl==1.9.1
     # via botorch
-pytest==8.3.5
+pytest==8.4.0
     # via
     #   baybe (pyproject.toml)
     #   pytest-cov
@@ -801,15 +805,15 @@ rich==14.0.0
     # via pip-audit
 roman-numerals-py==3.1.0 ; python_full_version >= '3.11'
     # via sphinx
-rpds-py==0.25.0
+rpds-py==0.25.1
     # via
     #   jsonschema
     #   referencing
 ruff==0.11.5
     # via baybe (pyproject.toml)
-s3transfer==0.12.0
+s3transfer==0.13.0
     # via boto3
-scikit-fingerprints==1.15.0
+scikit-fingerprints==1.16.0
     # via baybe (pyproject.toml)
 scikit-image==0.25.2
     # via lime
@@ -845,7 +849,7 @@ seaborn==0.13.2
     # via baybe (pyproject.toml)
 send2trash==1.8.3
     # via jupyter-server
-setuptools==80.8.0
+setuptools==80.9.0
     # via
     #   jupyterlab
     #   setuptools-scm
@@ -862,7 +866,7 @@ six==1.17.0
     #   pybtex
     #   python-dateutil
     #   rfc3339-validator
-skl2onnx==1.18.0
+skl2onnx==1.19.1
     # via baybe (pyproject.toml)
 slicer==0.0.8
     # via shap
@@ -948,11 +952,13 @@ threadpoolctl==3.6.0
     # via
     #   botorch
     #   scikit-learn
-tifffile==2025.5.10
+tifffile==2025.5.10 ; python_full_version < '3.11'
+    # via scikit-image
+tifffile==2025.6.1 ; python_full_version >= '3.11'
     # via scikit-image
 tinycss2==1.4.0
     # via bleach
-tokenize-rt==6.1.0
+tokenize-rt==6.2.0
     # via pyupgrade
 toml==0.10.2
     # via
@@ -980,7 +986,7 @@ torch==2.7.0
     #   botorch
     #   linear-operator
     #   pyro-ppl
-tornado==6.5
+tornado==6.5.1
     # via
     #   baybe (pyproject.toml)
     #   ipykernel
@@ -992,7 +998,7 @@ tornado==6.5
     #   terminado
 tox==4.26.0
     # via tox-uv
-tox-uv==1.25.0
+tox-uv==1.26.0
     # via baybe (pyproject.toml)
 tqdm==4.67.1
     # via
@@ -1027,7 +1033,7 @@ types-pytz==2025.2.0.20250516
     # via pandas-stubs
 types-seaborn==0.13.2.20250516
     # via baybe (pyproject.toml)
-typing-extensions==4.13.2
+typing-extensions==4.14.0
     # via
     #   baybe (pyproject.toml)
     #   altair
@@ -1062,7 +1068,7 @@ urllib3==2.4.0
     # via
     #   botocore
     #   requests
-uv==0.7.6
+uv==0.7.10
     # via
     #   baybe (pyproject.toml)
     #   tox-uv
@@ -1097,5 +1103,5 @@ xarray==2025.4.0
     #   xyzpy
 xyzpy==1.2.1
     # via baybe (pyproject.toml)
-zipp==3.21.0
+zipp==3.22.0
     # via importlib-metadata
@@ -13,6 +13,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
   control sampling in `farthest_point_sampling`
 - Flag for toggling parallel computation in `simulate_scenarios`
 - Additional transfer learning and synthetic benchmarks
+- New recommender based on large language models: `LLMRecommender`
 
 ### Fixed
 - Using `PosteriorStandardDeviation` with `MIN` targets no longer results in 

@@ -160,3 +160,7 @@ class InvalidSurrogateModelError(Exception):
 
 class InvalidTargetValueError(Exception):
     """A target value was entered that is not in the target space."""
+
+
+class LLMResponseError(Exception):
+    """Raised when there is an error processing the LLM response."""