Version 1.0.1

This new version of the software is based changes made in response to reviewer feedback.

We've added a new /scripts folder that contains some Python tools that we used for this project.

• ligate_staple_breaks.py merges broken staples back into unbroken staple precursors to aid in optimizing old designs
• make_scaffold_permutations.py was used to generate permuted scaffold sequences used in Fig. S12 analysis.
• staple_csv_to_color_xlsx.py converts a Cadnano-exported staple csv file into an Excel xlsx file with color highlighting

Full Changelog: v1.0.0...v1.0.1

Initial release

This is the initial release of our new "autobreak" software, to accompany the biorxiv preprint:

https://www.biorxiv.org/content/10.1101/2024.03.18.585609v1