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:shipit:
Happy hacking
:shipit:
Happy hacking
81 followers · 197 following

Achievements

Achievement: Pull Sharkx2Achievement: YOLOAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx2Achievement: YOLOAchievement: Arctic Code Vault Contributor

Organizations

@parisepigenetics

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cbouyio/README.md
  • 👋 Hi, this is Costas Bouyioukos (@cbouyio) assistant professor of bioinformatics at the Université Paris Cité (formerly Université de Paris or Université Paris Diderot - Paris VII)
  • 👀 I work in multiple subjects of bioinformatics, computational and systems biology. My main focus is developing methodological approaches for deciphering complex layers of biological regulation using computational tools for multi-omics data analysis and integration, as well as machine/deep learning
  • 👀 I manage the @parispeigenetics organisation (https://github.com/parisepigenetics) for research projects in the department of epigenetics and the @UParisCit-bioinfo (https://github.com/ParisDiderot-Bioinfo) organisation for my teaching
  • 🌱 I am actively developing, ML/DL models for multi-omics, single-cell, GRN reconstruction and structure-function interplay in genomics and structural biology.
  • 💞️ I am looking to collaborate on, computational methods for high-throughput metagenomics, multi-omics single-cell analyses and 3D biomolecular structures geometric representations and visualisation
  • 💞️ I am always particularly interested in modelling, simulating and analysing the structure and dynamics of complex biological networks.
  • 📫 How to reach me: cbouyio@gmail.com personal email or costas.bouyioukos@u-paris.fr professional email

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  1. parisepigenetics/great_3d parisepigenetics/great_3d Public

    A tool for the analysis and visualisation of 3d genome structure, epigenetics and gene expression.

    Python 4 2

  2. parisepigenetics/riboproanalysis parisepigenetics/riboproanalysis Public

    A comprehensive, best practices, pipeline for Ribo-seq experiments data analysis

    Shell 2 1

  3. parisepigenetics/rna_feat_ext parisepigenetics/rna_feat_ext Public

    Software tools to extract mRNA's features from a list of ENSEMBL gene IDs.

    Python 3 1

  4. parisepigenetics/pyna-colada parisepigenetics/pyna-colada Public

    Pina colada is a python application using 'straw' and 'juice-tools' to provide an more useful API to work with .hic Hi-C experiments files.

    Python

  5. shiny-your-gene-list shiny-your-gene-list Public

    An R-shiny interactive application to explore and valorise gene sets and lists from high throughput genomics experiments.

    R 1

  6. DU-Bii/module-6-Integrative-Bioinformatics DU-Bii/module-6-Integrative-Bioinformatics Public

    Integrative bioinformatics course of the Diplôme Universitaire en Bioinformatique Integrative (DU-Bii)

    HTML 8 6