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Issue #2: Grouped jackknife Imat construction was using sapply(seq_len_m, sample.int, ...) which passed iteration values as the first positional arg of sample.int, overriding the keyword n= and enabling replacement. Fix: matrix(sample.int(n, n-r), nrow=m) restores the correct without-replacement partition. Regenerated bcajack fixture since old fixture captured buggy acceleration values. Issue #7: Matrix subsetting x[-i, ] on single-column matrices drops the dimension, returning a vector instead of a matrix. This causes type inconsistency between jackknife (vector) and bootstrap (matrix) calls to func. Fix: drop=FALSE on all 5 matrix subsetting sites that pass data to func (jackknife_accel, bootstrap_resample, bca_nonpar). Issue #4/#1 (+ PR #5 idea): regression_accel silently produced NAs when ncol(Y) > length(nearby_idx), making lm() underdetermined. Fix: explicit check with actionable error message suggesting to increase B, increase kl_fraction, or use accel="jackknife". PR #8 (Bettina Gruen): Missing return() in K=0 path was already fixed in the tidy rewrite — bca_nonpar/bca_par use explicit return(new_bcaboot(...)).
Replace stop/warning/cat with cli::cli_abort/cli_warn/cli_text/cli_h3 across all R files for consistent, formatted output: - Error messages with bullet points and styled arg/code/pkg references - Print method with cli headers and styled labels - Warnings with cli formatting - Add cli to Imports in DESCRIPTION
- Re-export tidy/glance generics so library(bcaboot) makes them available - Register autoplot as S3method(ggplot2::autoplot, bcaboot) - Import rlang::.data for ggplot2 aes() usage - Add rlang to Imports - Separate re-export roxygen block from _PACKAGE to fix Rd WARNING - Add pkgdown/, README_files/ to .Rbuildignore - Centralize all @importFrom in R/bcaboot.R - Remove stale bcanon.Rd (function was removed) R CMD check: 0 errors, 0 warnings, 1 NOTE (CRAN incoming only)
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Fix issues and citation