GitHub - alfnie/evlab17: fMRI preprocessing and analysis pipeline (evlab.mit.edu)

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
.DS_Store		.DS_Store
.gitattributes		.gitattributes
.gitignore		.gitignore
Evlab17.pptx		Evlab17.pptx
el.m		el.m
evlab17.m		evlab17.m
evlab17_factorial.m		evlab17_factorial.m
evlab17_gmscale.m		evlab17_gmscale.m
evlab17_modelplots.m		evlab17_modelplots.m
evlab17_module.m		evlab17_module.m
evlab17_qaplots.m		evlab17_qaplots.m
evlab17_resultsplots.m		evlab17_resultsplots.m
evlab17_roiresultsplots.m		evlab17_roiresultsplots.m
evlab17_run.m		evlab17_run.m
evlab17_run_model.m		evlab17_run_model.m
evlab17_run_preproc.m		evlab17_run_preproc.m
evlab17_run_qa.m		evlab17_run_qa.m
evlab17_run_results.m		evlab17_run_results.m
evlab17_run_roiresults.m		evlab17_run_roiresults.m
example_datafiles_DicomFunctionals.cfg		example_datafiles_DicomFunctionals.cfg
example_datafiles_DicomFunctionalsStructurals.cfg		example_datafiles_DicomFunctionalsStructurals.cfg
example_datafiles_NiftiFunctionals.cfg		example_datafiles_NiftiFunctionals.cfg
example_modelfiles_langlocSN.cfg		example_modelfiles_langlocSN.cfg
example_modelfiles_langlocSN2.cfg		example_modelfiles_langlocSN2.cfg
path.CONN.txt		path.CONN.txt
path.SPM.txt		path.SPM.txt
pipeline_model_Default.cfg		pipeline_model_Default.cfg
pipeline_preproc_DefaultFS.cfg		pipeline_preproc_DefaultFS.cfg
pipeline_preproc_DefaultFS_Segment.cfg		pipeline_preproc_DefaultFS_Segment.cfg
pipeline_preproc_DefaultMNI.cfg		pipeline_preproc_DefaultMNI.cfg
pipeline_preproc_DefaultMNI_Denoise.cfg		pipeline_preproc_DefaultMNI_Denoise.cfg
pipeline_preproc_DefaultMNI_Denoise_PlusStructural.cfg		pipeline_preproc_DefaultMNI_Denoise_PlusStructural.cfg
pipeline_preproc_DefaultMNI_DirectNormalization.cfg		pipeline_preproc_DefaultMNI_DirectNormalization.cfg
pipeline_preproc_DefaultMNI_IndirectNormalization.cfg		pipeline_preproc_DefaultMNI_IndirectNormalization.cfg
pipeline_preproc_DefaultMNI_LiberalOutliers.cfg		pipeline_preproc_DefaultMNI_LiberalOutliers.cfg
pipeline_preproc_DefaultMNI_SliceTiming.cfg		pipeline_preproc_DefaultMNI_SliceTiming.cfg
pipeline_preproc_DefaultMNI_aCompCor.cfg		pipeline_preproc_DefaultMNI_aCompCor.cfg
pipeline_preproc_OnlyDenoise.cfg		pipeline_preproc_OnlyDenoise.cfg
pipeline_preproc_OnlySmooth.cfg		pipeline_preproc_OnlySmooth.cfg
pipeline_preproc_OnlyStructural.cfg		pipeline_preproc_OnlyStructural.cfg
readme.txt		readme.txt
ver.SPM.txt		ver.SPM.txt

Repository files navigation

Installation: 
  edit path.*.txt files to point to installation folder for SPM/CONN/SPM_SS packages
  edit ver.*.txt files to specify valid version/release numbers for SPM/CONN/SPM_SS packages

Usage:
  evlab17 init            : initializes evlab17 functions (run this at the beginning of each new Matlab session)
  evlab17 run_preproc ... : preprocessing functions (see HELP EVLAB_RUN_PREPROC)
  evlab17 run_model ...   : first-level analysis functions (see HELP EVLAB_RUN_MODEL)
  evlab17 spm_ss ...      : subject-specific toolbox functions (see HELP SPM_SS)