Add misalignment detection to apply_correspondences

[supersergiy]

Summary

• Run MisalignmentDetector (general model) on warped source vs target after correspondence relaxation
• Zero out misd mask where warped source or target has no data
• Install cue CLI in Dockerfile.gpu for model spec loading
• Returning misd instead of warped image is commented out for easy toggling

Uncomment warped_image_np = misd_as_input... in alignment.py to switch to misd output mode.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 99.98%. Comparing base (bd5fb01) to head (96a48c5).
⚠️ Report is 9 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #1193   +/-   ##
=======================================
  Coverage   99.98%   99.98%           
=======================================
  Files         192      192           
  Lines       10199    10203    +4     
=======================================
+ Hits        10197    10201    +4     
  Misses          2        2           

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.