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Issue with "salt-and-pepper" boundaries in BoundaryDefine caused by highly imbalanced subclusters when using leiden in InferCNV

Status: Open.

#27 In Yelab2020/Cottrazm;

· kzy513 opened on Feb 23, 2026

Apply to TMA?\

Status: Open.

#26 In Yelab2020/Cottrazm;

· Liulab opened on Feb 13, 2026

Xenium use

Status: Open.

#25 In Yelab2020/Cottrazm;

· Logan2k19 opened on Sep 17, 2025

can it be applied to visium HD?

Status: Open.

#24 In Yelab2020/Cottrazm;

· fja0217 opened on Jul 18, 2025

Error in py_call_impl(callable, call_args$unnamed, call_args$named) : AttributeError: 'str' object has no attribute 'decode'

Status: Open.

#23 In Yelab2020/Cottrazm;

· Arsenalwins opened on Feb 7, 2025

Error in py_call_impl(callable, call_args$unnamed, call_args$named) : AttributeError: 'str' object has no attribute 'decode'

Status: Open.

#22 In Yelab2020/Cottrazm;

· Arsenalwins opened on Feb 7, 2025

The results of repeating the 10X BRCA dataset seem to be completely reversed

Status: Open.

#21 In Yelab2020/Cottrazm;

· Jonyyqn opened on Nov 3, 2024

compute_interspot_distances scale.factor

Status: Open.

#20 In Yelab2020/Cottrazm;

· ConstantinosDemOx opened on Oct 31, 2024

Tumour Boundary with Leiden partitioning

Status: Open.

#18 In Yelab2020/Cottrazm;

· ConDem94 opened on Oct 18, 2024

Incompatible with Seurat 5

Status: Open.

#17 In Yelab2020/Cottrazm;

· alosdiallo opened on Oct 4, 2024

Error in STModiCluster

Status: Open.

#16 In Yelab2020/Cottrazm;

· Dor-Zhou opened on Aug 23, 2024

cannot open file 'infercnv.17_HMM_predHMMi6.rand_trees.hmm_mode-subclusters.observations_dendrogram.txt'

Status: Open.

#15 In Yelab2020/Cottrazm;

· upohsdscz opened on Aug 22, 2024