Modifications for psmr2024#1430

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NikEfth wants to merge 83 commits intomasterfrom

modifications_for_psmr2024

Commits on Mar 26, 2024

Adding support for singleTOF scanner.
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Commits on May 15, 2024

Fast reconstruction for LAFOV scanners
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Commits on May 16, 2024

Update src/buildblock/ProjDataInfo.cxx

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Update src/include/stir/ProjDataInfo.inl

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Update src/recon_buildblock/ProjMatrixByBin.cxx

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Minor fixes and comments.
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Minor fixes and executable to cache listmode files without reconstruction
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Update CMakeLists.txt

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Update src/IO/InterfileHeader.cxx

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Minor fixes
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Merge branch 'master' into modifications_for_psmr2024
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Split GeneralisedPriorTests into several classes

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fix abs() bug for RDP and slightly cleaner code

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change RDP Hessian behaviour at 0,0 when epsilon==0

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extra tests for the Relative Difference Prior

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make epsilon in numerical test for prior gradient a bit smaller

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fix and document RDP large limit test for numerical error

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update RDP doc [ci skip]

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increase numerical precision of priors

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[GHA] remove explicit setting of xcode version

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update Byte Order compile-time checks

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fix white-space

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List-mode objective function: always uses OpenMP for gradient

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use more local variables in LM_distributable_computation

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prepare LM_distributable function for Hessian

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minor clean-up and clarifications
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LM_listmode_function: implement Hessian and move functions

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fix error when OpenMP is not present

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Add compute_gradient* (as opposed to only subset)

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Move common test to ObjectiveFunctionTests

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add numerical test for accumulate_Hessian_times_input

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fix sign of LM Hessian

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LM obj-fun: add value() and tests

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LM objfun tests slightly better diagnostics

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[GHA] upload ctest artefact if failure

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add "increment" test for gradient (enabled for LM data)

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[GHA] disabled LM objfunc test on MacOS

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fix return value FastErf::get_maximum_sample_value

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[CMake] force C++ version for more recent ROOT

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update to 6.1 and minor doc improvements

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minor changes preparing for 6.1

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Changing all occurrences of abs() to std::abs() (#1425)

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add TOF loop in computation of Hessian for projdata

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fix set_up of norm in TOF ProjData gradient

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small rationalising of warnings

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let git blame ignore some maintenance commits

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updates to release notes

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update CITATION.cff according to git-fame

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small change to credits

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update history for release 6.1

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change comment to avoid confusing doxygen [ci skip]

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Merge remote-tracking branch 'refs/remotes/origin/modifications_for_psmr2024' into modifications_for_psmr2024
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Commits on May 17, 2024

Commits on May 18, 2024

Commits on May 19, 2024

Commits on Jun 1, 2024

Commits on Jun 12, 2024

Merge remote-tracking branch 'origin/master' into modifications_for_psmr2024
KrisThielemans
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