updated new

example/example.ipynb

@@ -32,7 +32,7 @@
           "name": "stdout",
           "output_type": "stream",
           "text": [
-            "Requirement already satisfied: protpeptigram in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (1.0.0.dev0)\n",
+            "Requirement already satisfied: protpeptigram in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (1.1.1.dev0)\n",
             "Requirement already satisfied: pandas>=1.3.0 in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (from protpeptigram) (2.2.3)\n",
             "Requirement already satisfied: numpy>=1.20.0 in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (from protpeptigram) (2.2.4)\n",
             "Requirement already satisfied: matplotlib>=3.4.0 in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (from protpeptigram) (3.10.1)\n",
@@ -51,13 +51,10 @@
             "Requirement already satisfied: python-dateutil>=2.7 in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (from matplotlib>=3.4.0->protpeptigram) (2.9.0.post0)\n",
             "Requirement already satisfied: pytz>=2020.1 in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (from pandas>=1.3.0->protpeptigram) (2025.2)\n",
             "Requirement already satisfied: tzdata>=2022.7 in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (from pandas>=1.3.0->protpeptigram) (2025.2)\n",
+            "Requirement already satisfied: six>=1.5 in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (from python-dateutil>=2.7->matplotlib>=3.4.0->protpeptigram) (1.17.0)\n",
             "Requirement already satisfied: markdown-it-py>=2.2.0 in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (from rich>=10.0.0->protpeptigram) (3.0.0)\n",
             "Requirement already satisfied: pygments<3.0.0,>=2.13.0 in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (from rich>=10.0.0->protpeptigram) (2.19.1)\n",
-            "Requirement already satisfied: mdurl~=0.1 in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (from markdown-it-py>=2.2.0->rich>=10.0.0->protpeptigram) (0.1.2)\n",
-            "Requirement already satisfied: six>=1.5 in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (from python-dateutil>=2.7->matplotlib>=3.4.0->protpeptigram) (1.17.0)\n",
-            "\n",
-            "\u001b[1m[\u001b[0m\u001b[34;49mnotice\u001b[0m\u001b[1;39;49m]\u001b[0m\u001b[39;49m A new release of pip is available: \u001b[0m\u001b[31;49m25.0.1\u001b[0m\u001b[39;49m -> \u001b[0m\u001b[32;49m25.1\u001b[0m\n",
-            "\u001b[1m[\u001b[0m\u001b[34;49mnotice\u001b[0m\u001b[1;39;49m]\u001b[0m\u001b[39;49m To update, run: \u001b[0m\u001b[32;49mpip install --upgrade pip\u001b[0m\n"
+            "Requirement already satisfied: mdurl~=0.1 in /Users/sanjay/Monash/Master_thesis/lab_work/Li_Lab/ProtPeptigram/.venv/lib/python3.12/site-packages (from markdown-it-py>=2.2.0->rich>=10.0.0->protpeptigram) (0.1.2)\n"
           ]
         }
       ],