Discussions

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  AlphaPulldown v2.1.8

  DimaMolod announced Feb 10, 2026 in Announcements

  

  

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  Resume prediction step over the same conditions

  otvrv asked Jan 30, 2026 in Q&A · Unanswered

  

  

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  MissingOutputException error: apparently latency time is not enough

  MauriAndresMU1313 asked Dec 26, 2025 in Q&A · Closed · Unanswered

  

  

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  What to expect after running installation and do you have any test data to check if it's working?

  MauriAndresMU1313 asked Nov 17, 2025 in Q&A · Closed · Unanswered

  

  

  

  

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  Instructions how to update AP snakemake

  documentation Improvements or additions to documentation

  jkosinski asked Oct 16, 2024 in Q&A · Unanswered

  

  

  

  

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  using several GPUs on a single workstation

  errinaceus asked May 8, 2024 in Q&A · Unanswered

  

  

  

  

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  Add ColabFold backend

  enhancement New feature or request

  jkosinski started Oct 15, 2024 in Ideas

  

  

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  Unclear fasta spec

  jkosinski asked Oct 29, 2025 in Q&A · Unanswered

  

  

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  Question about Rosetta Commons license requirements for analysis step

  ChloeQuignot asked Nov 21, 2025 in Q&A · Answered

  

  

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  Which system/platform/hardware needed for Alphapulldown?

  Magisterh1 asked Nov 10, 2025 in Q&A · Unanswered

  

  

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  Reuse of Alignments for Candidates in Pulldown mode with new Bait in v1.X

  RCowan1983 asked Aug 15, 2025 in Q&A · Unanswered

  

  

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  AlphaPulldown v2.1.0

  DimaMolod announced Jul 16, 2025 in Announcements

  

  

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  AlphaPulldown v2.1.0

  DimaMolod announced Jul 16, 2025 in Announcements

  

  

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  Does "iptm+ptm" in result table mean the average of iptm and ptm?

  fyang8 asked May 5, 2025 in Q&A · Closed · Unanswered

  

  

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  Does "iptm+ptm" in result table mean the average of iptm and ptm?

  fyang8 asked May 5, 2025 in Q&A · Unanswered

  

  

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  AlphaPulldown v2.0.3

  DimaMolod asked Mar 18, 2025 in Q&A · Unanswered

  

  

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  Pulldown mode with the whole mouse genome as candidate file

  PatriciaGimeno asked Mar 6, 2025 in Q&A · Answered

  

  

  

  

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  Multimeric bait protein with known structure

  t-fitzgerald asked Mar 12, 2025 in Q&A · Unanswered

  

  

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  Beginner Help: Issues with "Predict Structures (GPU stage)" and Running AlphaPulldown on Google Colab

  Yuan-323 asked Jan 2, 2025 in Q&A · Closed · Answered

  

  

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  AlphaPulldown v2.0.0

  DimaMolod announced Nov 6, 2024 in Announcements

  

  

  

  

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  How to speed up protein screening

  gabrielpan147 asked Nov 25, 2024 in Q&A · Unanswered

  

  

  

  

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  Unify input syntax

  jkosinski started Nov 7, 2024 in Ideas

  

  

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  Default options in the snakemake pipeline

  jkosinski started Oct 12, 2024 in General

  

  

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  PI score calculation failed

  jsquaredosquared asked Sep 1, 2024 in Q&A · Answered

  

  

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  Can I use AlphaPullDown for 5K proteins?

  Rohit-Satyam asked Oct 1, 2024 in Q&A · Unanswered

  

  

  

  

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