Written by Jonah R. Huggins
A container can be pulled from DockerHub that has the command-line interface pre-installed. The container is intended to be used from the command line, therefore running with an interactive (-i) teletypewriter (-t) flag is required. The below command will simultaneously pull the container from DockerHub and launch a session:
docker run -it --name demo jonahrileyhuggins/singlecell:latest
To restart the container from your last session, call the container by the assigned name, an example is provided below:
docker start -ai demo
The container has 3 primary commands, each with their own help profile. While the container should launch the command list on startup, to view the primary commands again, type
SingleCell --help #or -h
Further, to view the list of arguments and an example use case, you can use the --help flag with these as well
SingleCell <Primary Command> --help
This is a work in progress, if you encounter errors during any process, following these steps helps in development:
- Ensure you're working with the latest container version on DockerHub
- If the error persists; navigate to the GitHub page and leave an issue describing the problem you've encountered
