This repository contains the PTMScanner tool in a web application using the streamlit framework. It serves as a PTM-discovery tool which utilizies the TOPP tool SageAdapter . It includes solutions for handling user data and parameters in workspaces as well as deployment with docker-compose.
- PTM-discovery
Documentation for users and developers is included as pages in this template app, indicated by the 📖 icon.
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Pfeuffer, J., Bielow, C., Wein, S. et al. OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nat Methods 21, 365–367 (2024). https://doi.org/10.1038/s41592-024-02197-7
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Röst HL, Schmitt U, Aebersold R, Malmström L. pyOpenMS: a Python-based interface to the OpenMS mass-spectrometry algorithm library. Proteomics. 2014 Jan;14(1):74-7. https://doi.org/10.1002/pmic.201300246. PMID: 24420968.