Test/final

.gitignore

@@ -104,3 +104,6 @@ solutions/
 tmp/
 .claude/
 openai.json
+
+test-reports/
+.pip-cache/

backend/.coveragerc

@@ -0,0 +1,31 @@
+[run]
+source = app
+
+# Exclude integration-heavy modules that require external services and are not
+# part of the core business logic unit-test scope.
+omit =
+    # Transport layer (FastAPI routers/endpoints).
+    app/api/*
+    app/main.py
+
+    app/workers/*
+    app/services/mineru_*.py
+    app/services/email.py
+    app/services/verification_codes.py
+    app/core/redis.py
+    # External search/LLM integrations (require network keys/services).
+    app/services/academic/*
+    app/services/ai/*
+    app/api/v1/arxiv.py
+
+    # Infra glue (covered by integration tests in deployment, not unit tests).
+    app/db/session.py
+    app/db/paper_repository.py
+
+[report]
+show_missing = True
+skip_covered = True
+exclude_lines =
+    pragma: no cover
+    if TYPE_CHECKING:
+    raise NotImplementedError

backend/.coveragerc.external

@@ -0,0 +1,28 @@
+[run]
+source = app
+
+# External-API test suite still avoids MinerU/Celery/email/redis integrations.
+omit =
+    app/workers/*
+    app/services/mineru_*.py
+    app/services/email.py
+    app/services/verification_codes.py
+    app/core/redis.py
+
+[report]
+show_missing = True
+skip_covered = True
+include =
+    app/services/academic/providers/*
+    app/services/academic/search_service.py
+    app/services/academic/query_parser.py
+    app/services/ai/llm_client.py
+    app/services/ai/agent_controller.py
+    app/services/ai/tool_executor.py
+    app/services/ai/tool_interfaces.py
+    app/services/ai/tools.py
+    app/api/v1/arxiv.py
+exclude_lines =
+    pragma: no cover
+    if TYPE_CHECKING:
+    raise NotImplementedError

backend/.coveragerc.mineru

@@ -0,0 +1,24 @@
+[run]
+# Only measure MinerU-related code for the MinerU test group.
+source =
+    app.services.mineru_cli
+    app.services.mineru_runtime
+
+# MinerU test suite focuses on MinerU-related code; omit other external integrations.
+omit =
+    app/workers/*
+    app/services/email.py
+    app/services/verification_codes.py
+    app/core/redis.py
+    app/services/academic/*
+    app/services/ai/*
+    app/api/*
+    app/main.py
+
+[report]
+show_missing = True
+skip_covered = True
+exclude_lines =
+    pragma: no cover
+    if TYPE_CHECKING:
+    raise NotImplementedError

backend/.pip-cache/http-v2/7/9/5/1/c/7951c90562b5f02d14af0752098311d45a24bc94b49010d480f5c761.body

@@ -0,0 +1,235 @@
+Metadata-Version: 2.1
+Name: pytest-metadata
+Version: 3.1.1
+Summary: pytest plugin for test session metadata
+Project-URL: Homepage, https://github.com/pytest-dev/pytest-metadata
+Project-URL: Tracker, https://github.com/pytest-dev/pytest-metadata/issues
+Project-URL: Source, https://github.com/pytest-dev/pytest-metadata
+Author-email: Dave Hunt <dhunt@mozilla.com>, Jim Brannlund <jimbrannlund@fastmail.com>
+License-Expression: MPL-2.0
+License-File: AUTHORS
+License-File: LICENSE
+Keywords: metadata,pytest
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Framework :: Pytest
+Classifier: Intended Audience :: Developers
+Classifier: License :: OSI Approved :: Mozilla Public License 2.0 (MPL 2.0)
+Classifier: Natural Language :: English
+Classifier: Operating System :: MacOS :: MacOS X
+Classifier: Operating System :: Microsoft :: Windows
+Classifier: Operating System :: POSIX
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: Implementation :: CPython
+Classifier: Programming Language :: Python :: Implementation :: PyPy
+Classifier: Topic :: Software Development :: Quality Assurance
+Classifier: Topic :: Software Development :: Testing
+Classifier: Topic :: Utilities
+Requires-Python: >=3.8
+Requires-Dist: pytest>=7.0.0
+Provides-Extra: test
+Requires-Dist: black>=22.1.0; extra == 'test'
+Requires-Dist: flake8>=4.0.1; extra == 'test'
+Requires-Dist: pre-commit>=2.17.0; extra == 'test'
+Requires-Dist: tox>=3.24.5; extra == 'test'
+Description-Content-Type: text/x-rst
+
+pytest-metadata
+===============
+
+pytest-metadata is a plugin for `pytest <http://pytest.org>`_ that provides
+access to test session metadata.
+
+.. image:: https://img.shields.io/badge/license-MPL%202.0-blue.svg
+   :target: https://github.com/pytest-dev/pytest-metadata/blob/master/LICENSE
+   :alt: License
+.. image:: https://img.shields.io/pypi/v/pytest-metadata.svg
+   :target: https://pypi.python.org/pypi/pytest-metadata/
+   :alt: PyPI
+.. image:: https://img.shields.io/travis/pytest-dev/pytest-metadata.svg
+   :target: https://travis-ci.org/pytest-dev/pytest-metadata/
+.. image:: https://img.shields.io/badge/code%20style-black-000000.svg
+   :target: https://github.com/ambv/black
+   :alt: Travis
+.. image:: https://img.shields.io/github/issues-raw/pytest-dev/pytest-metadata.svg
+   :target: https://github.com/pytest-dev/pytest-metadata/issues
+   :alt: Issues
+.. image:: https://img.shields.io/requires/github/pytest-dev/pytest-metadata.svg
+   :target: https://requires.io/github/pytest-dev/pytest-metadata/requirements/?branch=master
+   :alt: Requirements
+
+Requirements
+------------
+
+You will need the following in order to use pytest-metadata:
+
+- Python 3.8+ or PyPy3
+
+Installation
+------------
+
+To install pytest-metadata:
+
+.. code-block:: bash
+
+  $ pip install pytest-metadata
+
+Contributing
+------------
+
+We welcome contributions.
+
+To learn more, see `Development <https://github.com/pytest-dev/pytest-metadata/blob/master/development.rst>`_
+
+Available metadata
+------------------
+
+The following metadata is gathered by this plugin:
+
+========  =============== ===================================
+Key       Description     Example
+========  =============== ===================================
+Python    Python version  3.6.4
+Platform  Platform        Darwin-17.4.0-x86_64-i386-64bit
+Packages  pytest packages {'py': '1.5.2', 'pytest': '3.4.1'}
+Plugins   pytest plugins  {'metadata': '1.6.0'}
+========  =============== ===================================
+
+Additional metadata
+-------------------
+
+You can provide your own metadata (key, value pair) by specifying ``--metadata`` on the commandline::
+
+   pytest --metadata foo bar
+
+Note: You can provide multiple sets of ``--metadata``::
+
+   pytest --metadata foo bar --metadata baz zoo
+
+There's also the possibility of passing in metadata as a JSON string::
+
+    pytest --metadata-from-json '{"cat_says": "bring the cat nip", "human_says": "yes kitty"}'
+
+Alternatively a JSON can be read from a given file::
+
+    pytest --metadata-from-json-file path/to/valid/file.json
+
+Continuous integration
+----------------------
+
+When run in a continuous integration environment, additional metadata is added
+from environment variables. Below is a list of the supported continuous
+integration providers, along with links to the environment variables that are
+added to metadata if they're present.
+
+* `AppVeyor <https://www.appveyor.com/docs/environment-variables/>`_
+* `Bitbucket <https://confluence.atlassian.com/bitbucket/environment-variables-794502608.html>`_
+* `CircleCI <https://circleci.com/docs/1.0/environment-variables/>`_
+* `GitLab CI <http://docs.gitlab.com/ce/ci/variables/README.html>`_
+* `Jenkins <https://wiki.jenkins-ci.org/display/JENKINS/Building+a+software+project#Buildingasoftwareproject-JenkinsSetEnvironmentVariables>`_
+* `TaskCluster <https://docs.taskcluster.net/reference/workers/docker-worker/environment>`_
+* `Travis CI <https://docs.travis-ci.com/user/environment-variables/>`_
+
+Note that if you're using `Tox <http://tox.readthedocs.io/>`_ to run your tests
+then you will need to `pass down any additional environment variables <http://tox.readthedocs.io/en/latest/example/basic.html#passing-down-environment-variables>`_
+for these to be picked up.
+
+Viewing metadata
+----------------
+
+If you pass ``--verbose`` on the command line when running your tests, then the
+metadata will be displayed in the terminal report header::
+
+  pytest --verbose
+  ============================ test session starts ============================
+  platform darwin -- Python 3.6.4, pytest-3.4.1, py-1.5.2, pluggy-0.6.0 -- /usr/bin/python
+  cachedir: .pytest_cache
+  metadata: {'Python': '3.6.4', 'Platform': 'Darwin-17.4.0-x86_64-i386-64bit', 'Packages': {'pytest': '3.4.1', 'py': '1.5.2', 'pluggy': '0.6.0'}, 'Plugins': {'metadata': '1.6.0'}}
+  plugins: metadata-1.6.0
+
+Including metadata in Junit XML
+-------------------------------
+
+Pytest-metadata provides the session scoped fixture :code:`include_metadata_in_junit_xml` that you may use to include any metadata in Junit XML as ``property`` tags.
+For example the following test module
+
+.. code-block:: python
+
+  import pytest
+
+  pytestmark = pytest.mark.usefixtures('include_metadata_in_junit_xml')
+
+  def test():
+      pass
+
+when called with
+
+.. code-block:: bash
+
+  pytest --metadata Daffy Duck --junit-xml=results.xml
+
+would produce the following XML
+
+.. code-block:: xml
+
+  <?xml version="1.0" encoding="utf-8"?>
+  <testsuites>
+    <testsuite name="pytest" errors="0" failures="0" skipped="0" tests="1" time="0.009" timestamp="2020-11-27T06:38:44.407674" hostname="sam">
+      <properties>
+        <property name="Daffy" value="Duck"/>
+  ...
+
+Accessing metadata
+------------------
+
+To add/modify/delete metadata at the end of metadata collection, you can use the ``pytest_metadata`` hook:
+
+.. code-block:: python
+
+  import pytest
+  @pytest.hookimpl(optionalhook=True)
+  def pytest_metadata(metadata):
+      metadata.pop("password", None)
+
+To access the metadata from a test or fixture, you can use the ``metadata``
+fixture:
+
+.. code-block:: python
+
+  def test_metadata(metadata):
+      assert 'metadata' in metadata['Plugins']
+
+To access the metadata from a plugin, you can use the ``stash`` attribute of
+the ``config`` object. This can be used to read/add/modify the metadata:
+
+.. code-block:: python
+
+  def pytest_configure(config):
+    metadata = config.pluginmanager.getplugin("metadata")
+    if metadata:
+        from pytest_metadata.plugin import metadata_key
+        config.stash[metadata_key]['foo'] = 'bar'
+
+Plugin integrations
+-------------------
+
+Here's a handy list of plugins that either read or contribute to the metadata:
+
+* `pytest-base-url <https://pypi.python.org/pypi/pytest-base-url/>`_ - Adds the
+  base URL to the metadata.
+* `pytest-html <https://pypi.python.org/pypi/pytest-html/>`_ - Displays the
+  metadata at the start of each report.
+* `pytest-reporter-html1 <https://pypi.org/project/pytest-reporter-html1/>`_ -
+  Presents metadata as part of the report.
+* `pytest-selenium <https://pypi.python.org/pypi/pytest-selenium/>`_ - Adds the
+  driver, capabilities, and remote server to the metadata.
+
+Resources
+---------
+
+- `Release Notes <http://github.com/davehunt/pytest-metadata/blob/master/CHANGES.rst>`_
+- `Issue Tracker <http://github.com/davehunt/pytest-metadata/issues>`_
+- `Code <http://github.com/davehunt/pytest-metadata/>`_