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@DasLab

Das Lab

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  1. KaggleOpenVaccine KaggleOpenVaccine Public archive

    Jupyter Notebook 56 7

  2. RiboGraphViz RiboGraphViz Public

    Visualize global properties of large RNAs using GraphViz force-directed layout.

    Jupyter Notebook 23 9

  3. openvaccine-CE-analysis openvaccine-CE-analysis Public archive

    Data and analysis of capillary electrophoresis data measuring mRNA degradation rates for Combinatorial Optimization of mRNA paper, Das and Barna labs (2020).

    Jupyter Notebook 10 3

  4. FARFAR2-SARS-CoV-2 FARFAR2-SARS-CoV-2 Public archive

    Models of SARS-CoV-2 genomic elements generated by FARFAR2

    9 1

  5. rna_benchmark rna_benchmark Public archive

    Python scripts & reference data for Rosetta RNA modeling benchmarks

    Scala 7 2

  6. casp-rna casp-rna Public archive

    Pipeline used to assess RNA in CASP15

    Jupyter Notebook 7 2

Repositories

Showing 10 of 46 repositories
  • rr_util Public

    Utilities for generating raw reads datasets for deep neural network training

    DasLab/rr_util’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 2, 2026
  • ubr Public

    Ultraplex-Bowtie2-RNAframework pipeline for analysis of SHAPE-MaP/DMS-MaP big library runs

    DasLab/ubr’s past year of commit activity
    MATLAB 3 MIT 1 0 0 Updated Feb 14, 2026
  • daslab_tools Public

    Tools, mainly for cluster usage, for Das lab at Stanford

    DasLab/daslab_tools’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 9, 2026
  • m2_util Public

    Utilities to extra mutate-and-map 2D maps from big library sequencing runs

    DasLab/m2_util’s past year of commit activity
    Python 0 0 0 0 Updated Jan 26, 2026
  • Water-CryoEM-ribozyme Public
    DasLab/Water-CryoEM-ribozyme’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Dec 23, 2025
  • create_templates Public

    Create 3D templates (or solution) file for RNA.

    DasLab/create_templates’s past year of commit activity
    Python 0 Apache-2.0 1 2 0 Updated Nov 2, 2025
  • CASP16_NA Public

    Repositoty accompanying analysis of CASP16 nucleic acid predictions

    DasLab/CASP16_NA’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Oct 27, 2025
  • Coronavirus_SL5_3D Public

    Accompanying the publication: Tertiary folds of the SL5 RNA from the 5’ proximal region of SARS-CoV-2 and related coronaviruses

    DasLab/Coronavirus_SL5_3D’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Aug 1, 2025
  • Server_Daslab Public

    Das Lab Website

    DasLab/Server_Daslab’s past year of commit activity
    HTML 1 3 5 3 Updated Jul 17, 2025
  • rnet-inference Public
    DasLab/rnet-inference’s past year of commit activity
    Python 0 MIT 0 0 0 Updated May 30, 2025
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