Add m-CAFEs Brachypodium RCC community entry (closes #14)#19
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realmarcin merged 1 commit intomainfrom Mar 6, 2026
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New community YAML for the m-CAFEs Reduced Complexity Consortia from PMID:38846575 (Chen et al., 2024). Enrichment-based rhizosphere consortia from Brachypodium distachyon with 10 keystone taxa, carbon substrate and transfer frequency perturbation design, and PRJNA990818 amplicon dataset. Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
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Pull request overview
Adds a new CommunityMech KB community entry for the m-CAFEs Brachypodium Reduced Complexity Consortia (RCC) enrichment framework (Chen et al., 2024; PMID:38846575), capturing design variables, keystone taxa, and linked sequencing data.
Changes:
- Introduces a new community YAML entry describing the RCC experimental/engineering design and environment context.
- Curates 10 keystone taxa with functional roles and supporting evidence.
- Links the associated 16S BioProject dataset (PRJNA990818) with provenance.
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Summary
kb/communities/mCAFEs_Brachypodium_RCC.yamlfor the m-CAFEs Reduced Complexity Consortia (RCC) from Brachypodium distachyon rhizospherejust validateagainst the LinkML schemaCloses #14
Test plan
just validate kb/communities/mCAFEs_Brachypodium_RCC.yamlpasses with no issues🤖 Generated with Claude Code