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ConesaLab - Genomics of gene expression

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  1. SQANTI3 SQANTI3 Public

    Tool for the Quality Control of Long-Read Defined Transcriptomes

    Python 258 64

  2. MultiPower MultiPower Public

    Statistical power studies for multi-omics experiments.

    R 32 10

  3. tappAS tappAS Public

    This repository contains the source code for the tappAS application. See README for details.

    Java 21 3

  4. acorde acorde Public

    Isoform co-usage networks from single-cell RNA-seq data

    HTML 16 6

  5. SQANTI SQANTI Public

    Python 14 3

  6. TCR_nextflow TCR_nextflow Public

    Nextflow 13 2

Repositories

Showing 10 of 40 repositories
  • SQANTI3 Public

    Tool for the Quality Control of Long-Read Defined Transcriptomes

    ConesaLab/SQANTI3’s past year of commit activity
    Python 258 GPL-3.0 64 14 2 Updated Mar 31, 2026
  • SQANTI-single-cell Public

    Repository for development of new single cell SQANTI tool

    ConesaLab/SQANTI-single-cell’s past year of commit activity
    R 3 MIT 0 0 0 Updated Mar 31, 2026
  • join_and_call_paper Public

    Code for the join & call publication

    ConesaLab/join_and_call_paper’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Mar 31, 2026
  • IsoAnnot Public
    ConesaLab/IsoAnnot’s past year of commit activity
    Python 9 2 2 0 Updated Mar 30, 2026
  • paintomics4 Public
    ConesaLab/paintomics4’s past year of commit activity
    JavaScript 8 GPL-3.0 0 0 0 Updated Mar 30, 2026
  • documenting_tusco Public
    ConesaLab/documenting_tusco’s past year of commit activity
    R 0 0 0 0 Updated Mar 24, 2026
  • STIMA Public

    Spatial Transcriptomics Image-based Methods for Alignment

    ConesaLab/STIMA’s past year of commit activity
    R 3 0 0 0 Updated Mar 20, 2026
  • tappAS Public

    This repository contains the source code for the tappAS application. See README for details.

    ConesaLab/tappAS’s past year of commit activity
    Java 21 3 12 0 Updated Mar 9, 2026
  • SQANTI-browser Public

    Tool for visualisation of SQANTI3 Long-Read Defined Transcriptomes in the UCSC Genome Browser

    ConesaLab/SQANTI-browser’s past year of commit activity
    HTML 7 GPL-3.0 0 0 0 Updated Feb 20, 2026
  • courses-SQANTI_verse Public
    ConesaLab/courses-SQANTI_verse’s past year of commit activity
    HTML 4 0 0 0 Updated Feb 17, 2026
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