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@BoevaLab

Boeva Lab, ETH Zurich

Computational (Epi-)genetics of Cancer

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  1. FREEC FREEC Public

    Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

    C++ 177 50

  2. CancerFoundation CancerFoundation Public

    CancerFoundation: A single-cell RNA sequencing foundation model to decipher drug resistance in cancer

    Jupyter Notebook 29 6

  3. ONCOCNV ONCOCNV Public

    ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data

    R 25 13

  4. LILY LILY Public

    Detection of super-enhancers in cancer data

    R 21 9

  5. ANS_signature_scoring ANS_signature_scoring Public

    ANS_signature_scoring: A gene expression signature scoring Python package.

    Python 18 3

  6. SV-Bay SV-Bay Public

    Detection of structural variants in cancer mate-pair and paired-end data

    Python 13 2

Repositories

Showing 10 of 48 repositories
  • sae-for-scFMs Public
    BoevaLab/sae-for-scFMs’s past year of commit activity
    Python 1 0 0 0 Updated Apr 7, 2026
  • ASAP Public

    Early feature extraction determines performance: systematic evaluation of deep learning models for high-resolution chromatin accessibility prediction

    BoevaLab/ASAP’s past year of commit activity
    Jupyter Notebook 3 MIT 1 2 0 Updated Mar 30, 2026
  • Chiron3D Public

    An interpretable deep learning framework for understanding the DNA code of chromatin looping

    BoevaLab/Chiron3D’s past year of commit activity
    Jupyter Notebook 2 MIT 1 0 0 Updated Mar 28, 2026
  • CDState Public
    BoevaLab/CDState’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Feb 18, 2026
  • ANS_signature_scoring Public

    ANS_signature_scoring: A gene expression signature scoring Python package.

    BoevaLab/ANS_signature_scoring’s past year of commit activity
    Python 18 MIT 3 1 0 Updated Jan 18, 2026
  • BoevaLab/ANS_supplementary_information’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 18, 2026
  • DeepCAST-GWAS Public

    This is the repository hosting all the source code of the DeepCAST-GWAS method.

    BoevaLab/DeepCAST-GWAS’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jan 6, 2026
  • ONCOCNV Public

    ONCOCNV - a package to detect copy number changes in Targeted Deep Sequencing and Exome-seq data

    BoevaLab/ONCOCNV’s past year of commit activity
    R 25 13 14 1 Updated Oct 30, 2025
  • spatial-augmentations Public

    Graph augmentation strategies for self-supervised pretraining of graph neural networks in spatial omics

    BoevaLab/spatial-augmentations’s past year of commit activity
    Python 1 MIT 0 5 5 Updated Oct 26, 2025
  • CanSig-benchmark Public

    CanSig: a package to compare methods for discovering shared transcriptional states in cancer.

    BoevaLab/CanSig-benchmark’s past year of commit activity
    Jupyter Notebook 5 MIT 1 1 0 Updated Oct 10, 2025

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