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possible problem parsing INFO description field

#89

· vjcitn opened

on May 22, 2025

ensemblVEP::parseCSQToGRanges

#88

· peterjuv opened

on Mar 7, 2025

locateVariants failing on intronic variants

#87

· jayoung opened

on Aug 9, 2024

`predictCoding` on empty ranges drops `REFAA`/`VARAA`, should be empty `AAStringSet` instead?

#86

· mschubert opened

on Aug 6, 2024

`expand()` and non-standard rowRanges columns

#85

· jayoung opened

on Jul 19, 2024

nonsense mutations from DBS across two codons misclassified as nonsynonymous?

#84

· ChristofferFlensburg opened

on Jul 11, 2024

Incorrect annotation of exon/intron boundary deletion

#83

· mschubert opened

on Jul 3, 2024

readVcf does not recognize my vcf file?

#82

· igrabski opened

on May 15, 2024

locateVariants() and predictCoding() silently drop large INDELs

#81

· johnstonmj opened

on Apr 25, 2024

`readVcf` doesn't handle quoted `=` in `hapmap_exome_chr22.vcf.gz` correctly

#80

· LTLA opened

on Jan 2, 2024

Convert `Number=A` to `Number=1` when creating an `ExpandedVCF`

#79

· LTLA opened

on Jan 2, 2024

Faithfully recapitulate metadata via a round-trip through `writeVcf` + `readVcf`.

#78

· LTLA opened

on Jan 2, 2024