Nextflow workflow for running GWA simulations

This is a repository for storing all scripts related to genome assembly, gene annotation, SV calling, GFF/FA file manipulation, functional enrichment analysis, gene set visualization, and syntelog decompression.

Andersen Lab Website

Nextflow pipeline for hifiasm de novo assembly and sequencing quality control

This is a nextflow process that predicts gene models in Caenorhabditis de novo assembled genomes using BRAKER3. The input to this process is a TSV/TXT that contains three columns: species, strain, <pathToAssembly>. Column headers of "species", "strain", "asm_path" are required.

Andersen Curriculum Vitae

C. elegans pathogen discovery through taxonomic classification from unaligned wild strains reads

Color codes for Caenorhabditis species and strains

GWA Mapping and Simulation with C. elegans, C. tropicalis, and C. briggsae

scripts, figures, and tables for C. briggsae PopGen and HDR manuscript